Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq16 187 4e-42 >seq16 Length=823159 Score = 187 bits (206), Expect = 4e-42 Identities = 577/881 (65%), Gaps = 15/881 (2%) Strand=Plus/Plus Query 49684 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 49743 ||||||||||||||||| || || || |||| || ||| || | ||||| || ||||| Sbjct 376808 ACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAAT 376867 Query 49744 GGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACA 49803 ||||| || || ||| ||||||| | | || |||||| || ||| Sbjct 376868 GGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAACA 376927 Query 49804 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 49863 || || || ||| ||||| | ||| |||||||| || || ||||| | | | Sbjct 376928 AACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGAC 376987 Query 49864 GCAGT-AAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTC 49922 | || ||||| || |||||||||| || || || | ||| || || | | Sbjct 376988 TCTGTCAAGAACTT-TTGTTCAATGACAACAGCCTCAAGCACAATGCCCCTGACCTTGGC 377046 Query 49923 TTCACTCGG-TGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGAC 49981 ||| || | | ||| | ||| | || | || ||| || || || ||| | | Sbjct 377047 CTCAGAAGGCTTGTTGCTG-AGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACC 377105 Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 | || || | | ||| || || ||||| || || ||||| ||||| || || | ||||| Sbjct 377106 CTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTT 377165 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | ||||| || || |||||||| || || || ||| | ||||| | Sbjct 377166 TGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACG 377225 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCT-----GTCATGTATCCACTTTTGAGCCCAATC 50156 | | | | ||| ||| | ||| || ||||| |||||||| | ||||| | Sbjct 377226 CCGCCAAACGCTCACCAAA--TGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCACTT 377283 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATT 50216 ||||| | | | || || || | || || || ||||| || | ||| || || | Sbjct 377284 TGCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTC-TG 377342 Query 50217 ACT-ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 50275 || ||||| || || || || | || || |||||||| |||||||| |||| Sbjct 377343 CCTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAA 377402 Query 50276 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC-AAAAT 50334 | || || || || ||||||||||| ||||| | |||||| || || | | ||| | Sbjct 377403 TCATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGT 377462 Query 50335 CGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT 50394 | ||| | | |||||||| || ||||| || ||| ||||| || || | | | Sbjct 377463 TGCTCA-CCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTC 377521 Query 50395 TTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA 50454 || ||||| | |||| || || || | ||| | | | || | || | | Sbjct 377522 TTGATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGA 377581 Query 50455 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 50514 || || || || | |||| || || || || |||||||| ||||||||||| | ||| Sbjct 377582 TCCACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCA 377641 Query 50515 TGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 50555 || || | ||||||||| | |||||||| |||| ||||| Sbjct 377642 TGGTACTTGATTGGGAACAGCACAAATCTGCTTGGGTTTGG 377682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268153558080