Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq16 163 3e-35 >seq16 Length=823159 Score = 163 bits (180), Expect = 3e-35 Identities = 482/735 (66%), Gaps = 6/735 (1%) Strand=Plus/Plus Query 13383 AACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAA 13442 ||| | |||||| |||||||| || || |||| || ||| || | |||||||| || || Sbjct 376807 AACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAA 376866 Query 13443 TGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAAT 13502 |||||| || | | ||| | || || ||| | | |||||| |||| Sbjct 376867 TGGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAAC 376926 Query 13503 AAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 13562 ||||||||| ||||| |||| | ||| ||||| || || || ||| || | Sbjct 376927 AAACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGA 376986 Query 13563 ATTAGTTAAAAATTCTTTTTCTATAGACA-CAGCCTCGTTTATAATAATCTTAATAATGT 13621 | || || || | || ||| || |||| ||||||| | ||| | | | || Sbjct 376987 CTCTGTCAAGAACTTTTGTTCAAT-GACAACAGCCTCAAGCACAATGCCCCTGACCTTGG 377045 Query 13622 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681 | | |||||| | | ||||| | || | | ||| ||||| || || | | Sbjct 377046 CCTCAGAAGGCTTGTTGCTGAGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACC 377105 Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 | ||||| | | |||||| || || || ||||| | ||||||||||| |||| |||| Sbjct 377106 CTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTT 377165 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || ||||| || || ||||| |||||||| || ||||||||| | ||||||| Sbjct 377166 TGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACG 377225 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | || || ||||| | ||| | | || ||||| || ||||| | | Sbjct 377226 CCGCCAAACGCTCACCAAATGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCACTTTG 377285 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAG 13921 |||| | ||| | || | || ||||| || || | || | ||||||| Sbjct 377286 CCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTCTGCCT 377345 Query 13922 TA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980 | |||| ||||||||| || | || | |||||||| ||| ||||| || || Sbjct 377346 CATCTTG-AATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAATC 377404 Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAG-TAAAATCT 14039 || || || ||||| |||||||| || |||| |||||||| | |||| | Sbjct 377405 ATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTTG 377464 Query 14040 TTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14099 || ||| ||||||||| ||||| ||||| || ||||| ||||| | ||||| || Sbjct 377465 CTC-ACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCTT 377523 Query 14100 AATAAAGTATTGCTC 14114 |||||||| |||| Sbjct 377524 GATAAAGTAACGCTC 377538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588369270080