Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq16 170 3e-37 >seq16 Length=823159 Score = 170 bits (188), Expect = 3e-37 Identities = 572/879 (65%), Gaps = 11/879 (1%) Strand=Plus/Plus Query 41789 ACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 41848 ||||||||||||||||| || ||||| |||| || ||| || | ||||| || ||||| Sbjct 376808 ACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAAT 376867 Query 41849 GGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATG 41908 ||||| || || ||| ||||||| | | || |||||| || | Sbjct 376868 GGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAACA 376927 Query 41909 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 41968 || || || ||| ||||| | ||| |||||||| || || ||||| | | | Sbjct 376928 AACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGAC 376987 Query 41969 ACAGT-AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC 42027 | || ||||| || ||||||||| || || || | ||| || || | | Sbjct 376988 TCTGTCAAGAACTT-TTGTTCAATGACAACAGCCTCAAGCACAATGCCCCTGACCTTGGC 377046 Query 42028 TTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGAC 42086 ||| || | | | | | ||| | || | || ||| || || || ||| | | Sbjct 377047 CTCAGAAGGCTTGTTGCTG-AGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACC 377105 Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 | ||||| | | ||| | || ||||| || || ||||| ||||| || || | ||||| Sbjct 377106 CTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTT 377165 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||| ||||| |||||||| || || || ||| | ||||| | Sbjct 377166 TGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACG 377225 Query 42207 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | | | ||| ||| | || | ||||| |||||||| | ||||| | | Sbjct 377226 CCGCCAAACGCTCACCAAATGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCACTTTG 377285 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTAC 42323 |||| | | | || || || | || || || ||||| || | ||| || || | | Sbjct 377286 CCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTC-TGCC 377344 Query 42324 T-ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATG 42382 | ||||| || ||||| || | || || |||||||| |||||||| ||||| Sbjct 377345 TCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAATC 377404 Query 42383 GCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC-AAAATCG 42441 || || || || ||||||||||| ||||| | || |||||| || | | ||| | | Sbjct 377405 ATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTTG 377464 Query 42442 TTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 42501 ||| | | ||||| || || ||||| || ||| ||||| || || | | | || Sbjct 377465 CTCA-CCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCTT 377523 Query 42502 TATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATC 42561 ||||| || |||| || | || | ||| | | | || | || | ||| Sbjct 377524 GATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGATC 377583 Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 || || || | |||| || || ||||| |||||||| ||||||||||| | ||||| Sbjct 377584 CACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCATG 377643 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660 || | |||||||| | |||||||| |||| ||||| Sbjct 377644 GTACTTGATTGGGAACAGCACAAATCTGCTTGGGTTTGG 377682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138595974720