Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq16 197 2e-45 seq7 147 3e-30 >seq16 Length=823159 Score = 197 bits (218), Expect = 2e-45 Identities = 581/879 (66%), Gaps = 26/879 (3%) Strand=Plus/Minus Query 124983 AGTAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCT 125042 || |||||| ||||| || |||| ||| ||||| | ||| | |||||||||||||| Sbjct 377673 AGCAGATTTGTGCTGTTCCCAATCAAGTACCATGAGGTGTGGAATATGTACAAAAAGGCG 377614 Query 125043 CAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTG-TACGATTGGGA 125101 | || || || |||| | || ||||| ||||| || | ||| ||| | ||||| Sbjct 377613 GAAGCGTCTTTCTGGAACGCTGAGGAGGTGGATCTCTCACATGACAAAATAC-ACTGGGA 377555 Query 125102 GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGG 125161 | | || | ||| ||||| | ||||| | |||| | || |||||||| | Sbjct 377554 AAAGCTTT---CAGAACACGAGCGTTACTTTATCAAGAACATCCTAGCATTCTTTGCTGC 377498 Query 125162 CTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAA-GAGTTGACCATTC 125220 ||| |||||||| ||||| || || ||| ||| | | | | ||| ||| | |||| Sbjct 377497 CTCGGATGGAATTGTCAATGAAAACCTGGTGAG-CAACTTTAGCAATGAGGTACAGATTC 377439 Query 125221 CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGT 125280 |||||| || || || || ||||||||||||||||||||| | ||| ||||||| Sbjct 377438 CAGAGGCAAGATGTTTCTATGGGTTCCAAATCATGATTGAGAACATTCACAGCGAAATGT 377379 Query 125281 ACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACG 125340 |||| ||| | |||| ||||||| ||| | | || || || ||||||| Sbjct 377378 ACTCACTGCTGCTGGACACATACATTCAAGATGAGGCAGAGAAGAACCACCTGTTTAACG 377319 Query 125341 CAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATG 125400 |||| |||| | |||| || | ||||||| | |||| | |||||| |||| Sbjct 377318 CAATTGACAACATTCCGTGCATTGGAGAAAAGGCAAAGTGGGCCCTGAAGTGGATTGATG 377259 Query 125401 ACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCT 125460 |||| || | | | | || | ||| ||| || || | || ||||| || |||| Sbjct 377258 ACGATGAGGCACCATTTGGTGAGCGTTTGGCGGCGTTTGCAGTAGTTGAGGGTATTTTCT 377199 Query 125461 TTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGA 125520 |||| || ||||| || || || |||||||| ||| | || || ||||| ||||| | Sbjct 377198 TTTCAGGATCGTTTGCAGCAATTTTCTGGCTCAAAAAGAGAGGGCTGATGCCAGGACTTA 377139 Query 125521 CGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTAC 125580 | | || ||| |||| | || || || || ||||| ||||||||| ||| | Sbjct 377138 CATTCTCCAATGAGCTTATTTGCCGCGATGAAGGGTTACACACAGACTTTGCCTGTCTGC 377079 Query 125581 TGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATT 125639 | || || | |||| | | | || | || | || | ||||||| |||| Sbjct 377078 TATT---CAGCCATCTCAG---CAA---CA-AGCCTTCTGAGGCCAAGGTCAGGGGCATT 377029 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATG 125699 || || || || || |||||| |||| | || || || | || || || Sbjct 377028 GTGCTTGAGGCTGTTGTCATTGAACAAAAGTTCTTGACAGAGTCGTTGCCAGTATCGCTG 376969 Query 125700 ATTGGCATGAAC--TGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 || || |||||| |||| || |||||| | ||||| |||||||| || ||| | || | Sbjct 376968 ATCGGAATGAACAGTGCA--CTGATGTGCCAATACATTGAGTTTGTTGCCGATAGACTGC 376911 Query 125758 T-GTA-CGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815 | || | |||| | ||| |||||| | ||||||| ||||| || ||| Sbjct 376910 TCATAGCTCTGGGATT--CTCCAAACACTACAACTCGCAGAATCCATTTGACTTTATGGA 376853 Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || || ||| | | || ||||||||||||||||| || Sbjct 376852 CATGATTTCAATGCAAGGCAAGACCAACTTTTTCGAAAA 376814 >seq7 Length=1083452 Score = 147 bits (162), Expect = 3e-30 Identities = 366/547 (67%), Gaps = 9/547 (2%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||| ||||| | | | ||| |||||||||||||| || | | ||| | || | Sbjct 948642 AACGAACGGGACATCGAATGGGATAGTGCCAATGCTCCGAGTATTCAACCATACAGCAAG 948701 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 || || || || || ||||| ||||||| || | || | ||| |||| || || Sbjct 948702 GTATGTGGACCAAGGAGGAAATAAGAGGCCAGGGGCATTTGCGATATACCTGGAGCCATG 948761 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAG-ATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||||||||| | ||||| ||| | ||| ||||||| ||| || || ||| Sbjct 948762 GCACGCGGACATCTTTGAGTTT-TTGAGTTTGCGCAAGAACCACGGAAAGGAGGAGAACA 948820 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | ||||||||||||| | | ||| | || |||||||| |||||||| || | Sbjct 948821 GGGCACGTGACTTGTTTTATGGAATGTGGATTCCGGATTTGTTTATGAAGCGGGTGCTGG 948880 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 || | | ||||||| | | ||||| || | | || ||| ||| |||| Sbjct 948881 ACAATAGGGACTGGAGTTTGTTCTGCCCACACGAGGCGCCAAATCTACACGAGGTTTGGG 948940 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCA---AGA-GGGCCGATACGTGAGA 97160 | || ||||||||||| |||||| |||||| | ||| |||| | | | ||| Sbjct 948941 GAGAGGAGTTTGAGGCATTGTACACAAAGTACGAGAACACAGAGGGGCTGGCAAGAAAGA 949000 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | || | |||| | |||||| | || || || | ||| | || || ||||| Sbjct 949001 AGGTTCCA-GCACAGCAGCTGTGGTACGCGATTCTGGACTCGCAGATTGAAACAGGAACA 949059 Query 97221 CCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 |||||||| || ||||| ||| |||| ||| |||| ||||| | || |||| || Sbjct 949060 CCGTACATGCTGTACAAAGAT-GCGTGCAATGGCAAGTCAAACCAGCAGAACCTGGGTAC 949118 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 |||||| |||||||| |||| || || ||||| |||||| | || |||||| ||| Sbjct 949119 AATCAAGAGCTCCAATTTGTGTACAGAGATTGTCGAGTACACGTCAAACGACGAGGTGGC 949178 Query 97340 AGTTTGC 97346 |||||| Sbjct 949179 GGTTTGC 949185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058533046720