Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq16 95.1 9e-15 >seq16 Length=823159 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| |||||||| || | | | | || || Sbjct 228705 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228764 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | ||||||||||||||||| ||| || || || || || | Sbjct 228765 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 228824 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || || || || || || || | |||||| |||||| Sbjct 228825 ATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTA 228884 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| ||||| ||||||||| Sbjct 228885 CCAGTCAGCGTTTTAACAAAGATTTGCATA 228914 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| |||||||| || | | | | || || Sbjct 228933 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228992 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | ||||||||||||||||| ||| || || || || || | Sbjct 228993 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 229052 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || || || || || || || | |||||| |||||| Sbjct 229053 ATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTA 229112 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| ||||| ||||||||| Sbjct 229113 CCAGTCAGCGTTTTAACAAAGATTTGCATA 229142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| |||||||| || | | | | || || Sbjct 229161 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 229220 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | ||||||||||||||||| ||| || || || || || | Sbjct 229221 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 229280 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || || || || || || || | |||||| |||||| Sbjct 229281 ATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTA 229340 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| ||||| ||||| || ||||| ||| Sbjct 229341 CCAGTCAGCGTTTTGACAAAGATCTGCATTTTT 229373 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || ||||| |||||||| || | | | | || || Sbjct 228477 ACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228536 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | ||||||||||||||||| ||| || || || || || | Sbjct 228537 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 228596 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || || || || || || || | |||||| |||||| Sbjct 228597 ATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTA 228656 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| ||||| ||||||||| Sbjct 228657 CCAGTCAGCGTTTTAACAAAGATTTGCATA 228686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178882187752