Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq16 241 1e-58 >seq16 Length=823159 Score = 241 bits (266), Expect = 1e-58 Identities = 570/849 (67%), Gaps = 14/849 (2%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || || || ||| ||| | |||||| |||||||| || || |||| | ||||| | Sbjct 376793 TTCTGGTAGTCGGAAACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATG 376852 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 |||||||| || || ||||| | ||| |||| ||| | || | ||| | | Sbjct 376853 TCCATAAAGTCAAATGGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGC 376912 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 | ||| || ||||||||||| ||||| || ||| | ||| ||||||||| || | Sbjct 376913 AGTCTATCGGCAACAAACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGC 376972 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 ||| |||| | ||||| || || |||| ||| || |||| || || | || ||| Sbjct 376973 GATACTGGCAACGACTCTGTCAAGAACTTTTGTTCAATGACAACAGCCTCAAGCACAATG 377032 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGAT--TTGAT-AGATGCTTAAACATCATACATGCA 13156 | | | || || | | ||| | ||| | ||||| | || | || ||| ||| Sbjct 377033 CCCC---TGACCTTGGCCTCAGAAGGCTTGTTGCTGAGATGGCTGAATAGCAGACAGGCA 377089 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 || || ||| || |||||||| | | || ||||| || || ||||| || || ||| Sbjct 377090 AAGTCTGTGTGTAACCCTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGC 377149 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || ||||||| ||||| | ||| || || || |||||||| || ||||| || || || Sbjct 377150 ATCAGCCCTCTCTTTTTGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCC 377209 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATA-CGTACTATTTTTACTC-TCTATCC 13334 |||||| |||||||||| ||| | |||||| | || | | | || || |||| Sbjct 377210 TCAACTACTGCAAACGCCGCCAAACGCTCACCAAATGGTGC--CTCATCGTCATCAATCC 377267 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 |||| |||||| ||||| |||| | || ||| || || || ||||||||||| | Sbjct 377268 ACTTCAGGGCCCACTTTGCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACA 377327 Query 13395 AATAAtttttttCCTTACT-GTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 | || || | || || ||| ||| || || || | || | |||||||| Sbjct 377328 GGTGGTTCTTCT-CTGCCTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCG 377386 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 ||||| || || ||| |||||||| ||||| |||||||| ||||||| | ||| Sbjct 377387 CTGTGAATGTTCTCAATCATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGT 377446 Query 13514 ACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || || | |||| | || | | |||||| || || || || || |||||||| Sbjct 377447 ACCTCATTGCTAAAGTTGCTC-ACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAA 377505 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 || || || |||| ||| ||||| | |||| |||||| | |||| ||| | | Sbjct 377506 GAATGCTAGGATGTTCTTGATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTAT 377565 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || | ||| | ||| ||||||||| || |||| ||||| || | ||||| || || Sbjct 377566 TTTGTCATGTGAGAGATCCACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTA 377625 Query 13693 CATCATCCA 13701 ||| |||| Sbjct 377626 CATATTCCA 377634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982021812944