Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq16 134 3e-26 >seq16 Length=823159 Score = 134 bits (148), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | ||| | ||||| || || || || || |||||||| | || | || || Sbjct 229157 AAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 229216 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || |||||||||||||||||||| | | ||||| || || || || || || ||||| Sbjct 229217 CTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATC 229276 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || || | || ||||| || ||||| || Sbjct 229277 CTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGT 229336 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACAGTATTT 104575 |||||||| || ||||| ||||| ||||||||||| | | ||||||| Sbjct 229337 TTTACCAGTCAGCGTTTTGACAAAGATCTGCATTTT-TATCTAGTATTT 229384 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | ||| | ||||| || || || || || |||||||| | || | || || Sbjct 228701 AAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 228760 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || |||||||||||||||||||| | | ||||| || || || || || || ||||| Sbjct 228761 CTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATC 228820 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || || | || ||||| || ||||| || Sbjct 228821 CTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGT 228880 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||| ||||| || ||||| Sbjct 228881 TTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | ||| | ||||| || || || || || |||||||| | || | || || Sbjct 228929 AAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 228988 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || |||||||||||||||||||| | | ||||| || || || || || || ||||| Sbjct 228989 CTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATC 229048 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || || | || ||||| || ||||| || Sbjct 229049 CTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGT 229108 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||| ||||| || ||||| Sbjct 229109 TTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | || | |||||| | || | ||||| || || || || || ||||||| Sbjct 228457 TTCCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 228516 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | | || | || || || |||||||||||||||||||| | | ||||| || || | Sbjct 228517 ACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 228576 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || || || ||||||||||||||| || || || || | || || | || | Sbjct 228577 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAA 228636 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || ||||| || |||||||| || ||||| ||||| || ||||| Sbjct 228637 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397337834976