Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq16 176 5e-39 >seq16 Length=823159 Score = 176 bits (194), Expect = 5e-39 Identities = 563/872 (65%), Gaps = 14/872 (2%) Strand=Plus/Plus Query 21199 AACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAA 21258 ||| | |||||||||||| || ||||| |||| || ||| || |||||||| ||||| Sbjct 376807 AACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAA 376866 Query 21259 TGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTAC 21318 |||||| | || || | ||| | ||||| || | | |||||| || || Sbjct 376867 TGGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAAC 376926 Query 21319 AAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGC 21378 ||| || || ||||| ||||| | | ||| ||||| ||||||| ||| || | | Sbjct 376927 AAACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGA 376986 Query 21379 TTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAA---CAATTATATTTA--TTATC 21433 | |||||| || || ||| || || || |||| |||| | | || | Sbjct 376987 CTCTGTCAAGAACTTTTGTTCAATGACAACAGCCTCAAGCACAATGCCCCTGACCTTGGC 377046 Query 21434 CT-AGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATG 21492 || ||| | || | | | | || | || | || ||| ||||| || || Sbjct 377047 CTCAGAAGG-CTTGTTGCTGAGA-----TGGCTGAATAGCAGACAGGCAAAGTCTGTGTG 377100 Query 21493 CAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCT 21552 || |||||||| | | || | ||||| || ||||| | || ||||| | ||||| Sbjct 377101 TAACCCTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCT 377160 Query 21553 CTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGC 21612 |||||| | ||| || |||| ||||| | ||||||||||||||| |||||||| | || Sbjct 377161 CTTTTTGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGC 377220 Query 21613 AAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCA 21672 ||| || | || || ||||| ||| | || | || ||||| || ||||| Sbjct 377221 AAACGCCGCCAAACGCTCACCAAATGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCA 377280 Query 21673 TTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttC 21732 |||||||||||| ||| || ||| | ||||| || || || || || || || || Sbjct 377281 CTTTGCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTC 377340 Query 21733 ATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTC 21792 | |||| ||| |||||||| || || || || Sbjct 377341 TGCCTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTC 377400 Query 21793 TATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC-GGAATAAA 21851 ||| || || || || || |||||||||||||||| | || ||||| |||| Sbjct 377401 AATCATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAA 377460 Query 21852 ATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATAT 21911 | | | | ||| ||||||||| || |||||||| ||| ||||| ||||| | || | Sbjct 377461 GTTGCTCA-CCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGT 377519 Query 21912 TTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATA 21971 | || ||||| || || |||| |||| | |||| ||| | || | || | ||| | Sbjct 377520 TCTTGATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGA 377579 Query 21972 AATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATAT 22031 ||| || || |||| |||| || || |||||||| |||||| |||| | | Sbjct 377580 GATCCACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCT 377639 Query 22032 CATTATATATTATTGGAAATATTACAAACCTG 22063 ||| || | ||||| || | ||||| ||| Sbjct 377640 CATGGTACTTGATTGGGAACAGCACAAATCTG 377671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900321289280