Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq12 140 2e-28 seq16 123 2e-23 seq25 98.7 7e-16 >seq12 Length=1112767 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 41777 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 41836 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 41837 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 41871 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 44155 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTT 44214 Query 20007 GGTAATATTTAGCCTTA 20023 | | ||||||||| ||| Sbjct 44215 GCTTATATTTAGCTTTA 44231 >seq16 Length=823159 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||||| || ||||||||| || ||||| |||| Sbjct 229141 TACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 229200 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||||||||| ||||| || | |||||||| || | | Sbjct 229201 ACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 229260 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||| |||||||| || || | || || ||| |||| Sbjct 229261 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAA 229320 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | ||||| |||||||| |||| ||||| || || |||||||| ||| Sbjct 229321 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCATTTTT 229373 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||||| || ||||||||| || ||||| |||| Sbjct 228685 TACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 228744 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||||||||| ||||| || | |||||||| || | | Sbjct 228745 ACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 228804 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||| |||||||| || || | || || ||| |||| Sbjct 228805 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAA 228864 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| |||||||| |||| ||||| || || || ||||| Sbjct 228865 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||||| || ||||||||| || ||||| |||| Sbjct 228913 TACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 228972 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||||||||| ||||| || | |||||||| || | | Sbjct 228973 ACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 229032 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||| |||||||| || || | || || ||| |||| Sbjct 229033 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAA 229092 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| |||||||| |||| ||||| || || || ||||| Sbjct 229093 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 >seq25 Length=285220 Score = 98.7 bits (108), Expect = 7e-16 Identities = 207/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCG-CATCTGCGCCAAGGTCGAGGGT 6245 ||||| |||| | | |||| | ||||| ||||| || | || | | ||| | |||||| Sbjct 158430 ATGTGCAGGACTCTTACTACAGGTACAAGATGCCACGTCTTCAGT-CAAAGATTGAGGGT 158488 Query 6246 AAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGA 6305 || ||||| || || ||||| || ||| |||||| | || | | | ||||| | Sbjct 158489 AAAGGAAATGGAATCAAAACAGTGATTCCAAACATGGCAGACATATCAAGAGCGCTTTCA 158548 Query 6306 CGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTT 6365 | || | | ||| | || || || || || | || ||||| || || | || || Sbjct 158549 AGACCACCATCATACGCAACAAAGTACTTTGGATCAGAGCTTGGAGCACAAGTGAAGATT 158608 Query 6366 GATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGAC 6425 || |||| ||||| | | ||| ||||| || |||||| || | | |||||||| Sbjct 158609 GAGGACAAGAACGACAGGTACATAGTTAATGGGTCGCATGACGCAGAGAAGCTGCAAATA 158668 Query 6426 TTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAA--TGCGATAACCCGGAGA 6483 |||| || || ||||| |||||||||||||||| |||| ||| | ||||| || | Sbjct 158669 ATACTGGATGGATTTATCGACAAGTTTGTGCTGTGT--GGAAGTTGCAAGAACCCCGAAA 158726 Query 6484 CCGA 6487 | || Sbjct 158727 CGGA 158730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946906083832