Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq16 179 5e-40 >seq16 Length=823159 Score = 179 bits (198), Expect = 5e-40 Identities = 574/878 (65%), Gaps = 13/878 (1%) Strand=Plus/Plus Query 32385 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 32444 ||||||||||||||||| || || || |||| | ||| || | ||||| || || ||| Sbjct 376808 ACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAAT 376867 Query 32445 GGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA 32504 ||||| || || ||| ||||||| | | || |||||| || ||| Sbjct 376868 GGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAACA 376927 Query 32505 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 32564 || || || ||| ||||| | ||| |||||||| || || ||||| | | | Sbjct 376928 AACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGAC 376987 Query 32565 ACAGT-AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC 32623 | || ||||| || ||||||||| || || || | ||| || || | | Sbjct 376988 TCTGTCAAGAACTT-TTGTTCAATGACAACAGCCTCAAGCACAATGCCCCTGACCTTGGC 377046 Query 32624 TTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 32682 ||| || | | | | | ||| | || | || ||| || || || ||||| | Sbjct 377047 CTCAGAAGGCTTGTTGCTG-AGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACC 377105 Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 | || || | | ||| | || ||||| || || ||||| ||||| || || | ||||| Sbjct 377106 CTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTT 377165 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || | ||||| ||||| ||||||||||| || || ||| | ||||| | Sbjct 377166 TGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACG 377225 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCT----GTCATGTATCCACTTTTGAGCCCAATCG 32858 | | | ||| ||| || | || ||||| |||||||| | ||||| | Sbjct 377226 CCGCCAAACGCTCACCA-AATGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCACTTT 377284 Query 32859 GCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA 32918 ||||| | | | || || || | || || || ||||| || | ||| || || | Sbjct 377285 GCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTC-TGC 377343 Query 32919 CT-ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 32977 || ||||| || ||||| || | || || |||||||| |||||||| ||||| Sbjct 377344 CTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAAT 377403 Query 32978 GGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC-AAAATC 33036 ||||| || || ||||| ||||| ||||| | ||||||||| || | | ||| | Sbjct 377404 CATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTT 377463 Query 33037 GTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 33096 | || | | |||||||| || ||||| || ||| ||||| || || | | | | Sbjct 377464 GCTC-ACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCT 377522 Query 33097 TTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 33156 | ||||| || |||| | || || || | ||| | | | || | || | || Sbjct 377523 TGATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGAT 377582 Query 33157 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 33216 |||| || || | |||| || || || || |||||||| ||||||||||| | |||| Sbjct 377583 CCACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCAT 377642 Query 33217 GATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 33254 | || | ||||| || | |||||||| |||| ||| Sbjct 377643 GGTACTTGATTGGGAACAGCACAAATCTGCTTGGGTTT 377680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631429731200