Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq56 145 1e-29 seq16 145 1e-29 seq33 100 5e-16 >seq56 Length=671324 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 567835 CCACCACGGAGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 567776 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||||| ||||| || || | | ||| || || || ||| Sbjct 567775 AAGGTACGGCCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGA 567716 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || |||||| || ||| |||||||| |||| ||||| || Sbjct 567715 ATTCCTTCCTTATCCTGGATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACC 567656 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||| || || || || ||||| || || ||||||||| Sbjct 567655 TCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCATT 567608 >seq16 Length=823159 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 |||||||| || ||||| || | ||||||||| || || ||||| ||||||||||| || Sbjct 228453 TAATTTCCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAG 228512 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || | || | ||||| || | || || || || || || | | ||||||||| Sbjct 228513 TCAGACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCT 228572 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 ||||| || || ||||| || ||||||||| ||||||| ||||| ||||||| || Sbjct 228573 GGTGGGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGAC 228632 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||| || ||||| || || || || || || || || ||||| Sbjct 228633 TCAACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || || || ||||| ||||||||||| || || || Sbjct 229143 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 229202 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | || || || || || || | | ||||||||| ||||| Sbjct 229203 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 229262 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || ||||||||| ||||||| ||||| ||||||| || || || Sbjct 229263 ATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACC 229322 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| || ||||| || || || || ||||| || ||||||||| Sbjct 229323 TCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCATT 229370 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || || || ||||| ||||||||||| || || || Sbjct 228687 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228746 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | || || || || || || | | ||||||||| ||||| Sbjct 228747 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 228806 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || ||||||||| ||||||| ||||| ||||||| || || || Sbjct 228807 ATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACC 228866 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || ||||| || || || || || || || || ||||| Sbjct 228867 TCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || || || ||||| ||||||||||| || || || Sbjct 228915 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228974 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | || || || || || || | | ||||||||| ||||| Sbjct 228975 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 229034 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || ||||||||| ||||||| ||||| ||||||| || || || Sbjct 229035 ATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACC 229094 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || ||||| || || || || || || || || ||||| Sbjct 229095 TCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 93.3 bits (102), Expect = 8e-14 Identities = 569/895 (64%), Gaps = 28/895 (3%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 ||||||| || ||||||||||| || || || || ||||| ||||||| |||||| | Sbjct 376779 TCATGACACCAGCCTTCTGGTAGTCGGAAACACGTTTTTCGAAAAAGTTGGTCTTGCCTT 376838 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 | ||||| | ||||| |||||||| || |||| | | | || |||| | | | Sbjct 376839 GCATTGAAATCATGTCCATAAAGTCAAATGGATTCTGCGAGTTGTAGTGTTTGGAGAATC 376898 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || ||| ||| | | || || || ||||| ||||| |||| |||||| | || Sbjct 376899 CCAGAGCTATGAGCAGTCTATCGGCAACAAACTCAATGTATTGGCACATCAGTGCACTGT 376958 Query 10114 TCATGCCAATCATGCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||| || |||| ||| | || | | || | ||| | | ||| || | || Sbjct 376959 TCATTCCGATCA-GCGATACTGGCAACGACTCTGTCAAGAACTTTTGTTCAATGACAACA 377017 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCT--TCGAAT 10230 || || || |||| | | ||| | | || ||||||| ||| | |||| Sbjct 377018 GCCTCAAGCACAATGCCCCTGACCTTGGCCTCAGAAGGCTTGTTGCTGAGATGGCTGAAT 377077 Query 10231 ACAGGAGCTCTCCAAACTGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGAC 10289 || || |||| | ||| ||| | || || ||||||| || | ||| ||||| Sbjct 377078 --AGCAGACAGGCAAAGT-CTGTGTGTAACCCTTCATCGCGGCAAATAAGCTCATTGGAG 377134 Query 10290 AAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGC-GCAGAACGACCC 10348 || || || ||||| ||||| | || ||||||||||| || ||| ||||| || Sbjct 377135 AATGTAAGTCCTGGCATCAGCCCTCTCTTTTTGAGCCAGAAAATTGCTGCA-AACGATCC 377193 Query 10349 GGAGAACAGAAGACCCTCCAC----GCACACCCAGGCGACGAGGCGCTCTGCGAA-GGAG 10403 || || | || |||||| || ||| || || | | ||||| | || || | Sbjct 377194 TGAAAAGAAAATACCCTCAACTACTGCAAAC----GCCGCCAAACGCTCACCAAATGGTG 377249 Query 10404 C--GGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCG 10461 | ||| || | ||| ||||||| |||||| | ||| | | || || Sbjct 377250 CCTCATCGTCATCAATCCACTTCAGGGCCCACTTTGCCTTTTCTCCAATGCACGGAATGT 377309 Query 10462 TCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGA 10521 | || || || | || || | ||| ||| | ||| || | ||| | || || | Sbjct 377310 TGTCAATTGCGTTAAACAGGTGGTTCTTCTCTGCCTCATCTTGAATGTATGTGTCCAGCA 377369 Query 10522 GCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAG-AACATA 10580 |||| ||||| |||||||| | | ||||| | ||| | | ||| ||||| Sbjct 377370 GCAGTGAGTACATTTCGCTGTGAATGTTCTCAATCATGATTTGGAACCCATAGAAACAT- 377428 Query 10581 CGTGCC-GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCAT 10639 | |||| || || || || || | | ||||||| | |||||| || | || || Sbjct 377429 CTTGCCTCTGGAATCTGT-ACCTCATTGCTAAAGTTGCTCACCAGGTTTTCATTGACAAT 377487 Query 10640 GCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTT 10699 ||||| | | |||||||| | ||||||| |||||| |||| ||||| | || Sbjct 377488 TCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCTTGATAAAGTAACGCTCGTGTTCTGA 377547 Query 10700 CAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759 || ||||| ||||| || || || ||| | |||||||| || ||||||| Sbjct 377548 AAGCTTTTC---CCAGTGTATTTTGTCATGTGAGAGATCCACCTCCTCAGCGTTCCAGAA 377604 Query 10760 AGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 || || | ||||| |||||||| | | | || ||||| ||| |||||| Sbjct 377605 AGACGCTTCCGCCTTTTTGTACATATTCCACACCTCATGGTACTTGATTGGGAAC 377659 >seq33 Length=522307 Score = 100 bits (110), Expect = 5e-16 Identities = 92/115 (80%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| ||||| |||||| |||||| || ||||| |||| || || || || Sbjct 111271 CCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTATCTGAGGACTCAACCTCA 111212 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTAT 68472 | |||||||||||||||||| |||||||| ||||| ||||||||| | | ||||| Sbjct 111211 AGGGTGATGGTTTTTCCCGTAAGGGTCTTTACGAAGATCTGCATTCTAC-ATTAT 111158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621570539840