Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq16 118 9e-22 seq56 109 5e-19 >seq16 Length=823159 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | ||||| || ||||| |||||||| || Sbjct 229140 ATACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 229199 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||||||||| ||||| | || | ||| |||||||| || Sbjct 229200 GACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGT 229259 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||||||| || | | || | ||||| | ||| || Sbjct 229260 GGGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCA 229319 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || ||||| ||||| ||||| |||||||| Sbjct 229320 ACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCAT 229369 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | ||||| || ||||| |||||||| || Sbjct 228684 ATACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 228743 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||||||||| ||||| | || | ||| |||||||| || Sbjct 228744 GACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGT 228803 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||||||| || | | || | ||||| | ||| || Sbjct 228804 GGGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCA 228863 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 228864 ACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | ||||| || ||||| |||||||| || Sbjct 228912 ATACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 228971 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||||||||| ||||| | || | ||| |||||||| || Sbjct 228972 GACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGT 229031 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||||||| || | | || | ||||| | ||| || Sbjct 229032 GGGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCA 229091 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 229092 ACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || ||||| |||||||| || || || || ||| ||||||||||| ||| Sbjct 228489 GTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCAAGTTGTTTTCCA 228548 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | ||| |||||||| || || || || || || || ||||||||| || Sbjct 228549 GCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTTTTGCTTG 228608 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||| || || || | ||| | ||||| || ||||| ||| Sbjct 228609 ACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAGTCAGCGTT 228668 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 228669 TTAACAAAGATTTGCAT 228685 >seq56 Length=671324 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | || ||||| ||||| |||||||| ||| Sbjct 567836 ACCACCACGGAGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 567777 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| ||| |||||||| ||||| || | || | ||| || || || || || Sbjct 567776 CAAGGTACGGCCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGG 567717 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||||||||| | | || | ||| || | ||||| || Sbjct 567716 AATTCCTTCCTTATCCTGGATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCAC 567657 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || || ||||||||||||||||| Sbjct 567656 CTCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCAT 567609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134031332064