Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq56 91.5 2e-13 seq16 87.8 2e-12 >seq56 Length=671324 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||||| || ||||| || | || || || | || || Sbjct 567817 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCA 567758 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || |||||||| || || || | || ||||| || | || | | ||||| ||| | Sbjct 567757 AGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGG 567698 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || |||||||| | | | | || || |||||||| |||| |||||||| || Sbjct 567697 ATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCTTC 567638 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || ||||| ||||||||||| || |||||| Sbjct 567637 CCAGTTAGTGTCTTTACAAAAATCTGCATT 567608 >seq16 Length=823159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| || ||||||||| || ||||| |||| || || || | || || Sbjct 228477 ACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228536 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || || ||||| || || | || || ||||| | ||| | | |||||| ||| Sbjct 228537 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 228596 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || ||||| |||| ||| | | | ||||| || || || || | || || ||||| Sbjct 228597 ATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 228655 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || |||||||||||||| Sbjct 228656 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || ||||||||| || ||||| |||| || || || | || || Sbjct 228705 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228764 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || || ||||| || || | || || ||||| | ||| | | |||||| ||| Sbjct 228765 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 228824 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || ||||| |||| ||| | | | ||||| || || || || | || || ||||| Sbjct 228825 ATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 228883 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || |||||||||||||| Sbjct 228884 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || ||||||||| || ||||| |||| || || || | || || Sbjct 228933 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228992 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || || ||||| || || | || || ||||| | ||| | | |||||| ||| Sbjct 228993 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 229052 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || ||||| |||| ||| | | | ||||| || || || || | || || ||||| Sbjct 229053 ATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 229111 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || |||||||||||||| Sbjct 229112 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212311108480