Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq16 118 1e-21 seq56 116 4e-21 >seq16 Length=823159 Score = 118 bits (130), Expect = 1e-21 Identities = 338/508 (67%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 |||||| || | ||||||| ||||||| |||||||||| || ||| || | Sbjct 377304 CCGTGCATTGGAGAAAAGGCAAAGTGGGCCCTGAAGTGGATTGATGACGATGAGGCACCA 377245 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | | ||||| ||| ||| || || |||| ||||| | || ||||| || ||| Sbjct 377244 TTTGGTGAGCGTTTGGCGGCGTTTGCAGTAGTTGAGGGTATTTTCTTTTCAGGATCGTTT 377185 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 || || || || | | |||| || ||| | ||||| || || || ||| ||| ||| Sbjct 377184 GCAGCAATTTTCTGGCTCAAAAAGAGAGGGCTGATGCCAGGACTTACATTCTCCAATGAG 377125 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCG 52567 | || | ||||| ||||| | ||||| |||||||| || || ||| | || || Sbjct 377124 CTTATTTGCCGCGATGAAGGGTTACACACAGACTTTGCCTGTCTGCTATT-CA----GC- 377071 Query 52568 CGTGACCGAAAAATTGGATTCGGA---CACGATCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 | | | | || | | ||| || || | || | |||| | ||||| || | Sbjct 377070 CATCTCAGCAACAA-GCCTTCTGAGGCCAAGGTCAGGGGCATTGTGCTTGAGGCTGTTGT 377012 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGC 52683 || ||| | |||| || || | || |||| || |||| | || |||||| | || Sbjct 377011 CATTGAACAAAAGTTCTTGACAGAGTCGTTGCCAGTATCGCTGATCGGAATGAACAGTGC 376952 Query 52684 AGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAG- 52742 | | |||||| | ||||| |||||||| || ||| | ||| | | ||||| || | Sbjct 376951 ACTG-ATGTGCCAATACATTGAGTTTGTTGCCGATAGACTGCTCAT--AGCTCTGGGATT 376895 Query 52743 --CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 ||||| ||| |||| | | ||||| ||||| |||||| ||| ||||| | | | Sbjct 376894 CTCCAAAC-ACTACAACTCGCAGAATCCATTTGACTTTATGGACATGATTTCAATGCAAG 376836 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||||||||||||||||| || || || Sbjct 376835 GCAAGACCAACTTTTTCGAAAAACGTGT 376808 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||||||||| ||||||||||| | Sbjct 229143 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 229202 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| |||||||| || | | | || | ||| |||||||| || || Sbjct 229203 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 229262 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || || ||||| || | | || | ||||| | ||||| ||| Sbjct 229263 ATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACC 229322 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||||| ||||| ||||| |||||||| Sbjct 229323 TCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCAT 229369 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||||||||| ||||||||||| | Sbjct 228687 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228746 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| |||||||| || | | | || | ||| |||||||| || || Sbjct 228747 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 228806 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || || ||||| || | | || | ||||| | ||||| ||| Sbjct 228807 ATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACC 228866 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||||| ||||| ||||| || ||||| Sbjct 228867 TCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||||||||| ||||||||||| | Sbjct 228915 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228974 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| |||||||| || | | | || | ||| |||||||| || || Sbjct 228975 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 229034 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || || ||||| || | | || | ||||| | ||||| ||| Sbjct 229035 ATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACC 229094 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||||| ||||| ||||| || ||||| Sbjct 229095 TCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | ||||||||||| ||||||||||| | Sbjct 228459 CCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228518 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| |||||||| || | | | || | ||| |||||||| || || Sbjct 228519 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 228578 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || || ||||| || | | || | ||||| | ||||| ||| Sbjct 228579 ATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACC 228638 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||||| ||||| ||||| || ||||| Sbjct 228639 TCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 >seq56 Length=671324 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| || ||||| ||||| ||||| ||||||| | Sbjct 567802 GATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTACCGGCA 567743 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | ||| || || || || || || ||||| || || ||| |||||||| | Sbjct 567742 AAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTTTGTTTAACG 567683 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | || |||||||||| || | || || ||||| || || ||| Sbjct 567682 TTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTT 567623 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 567622 ACAAAAATCTGCAT 567609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261953363840