Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq56 113 4e-20 seq16 113 4e-20 >seq56 Length=671324 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || ||| | ||| ||| || | ||| Sbjct 567811 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGTTGC 567752 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct 567751 TTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTT 567692 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| | || | || | ||| || ||||| || || ||||| || | || || || || Sbjct 567691 TGTTTAA-CGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCTTCCCAGT 567633 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||||||||| ||||| Sbjct 567632 TAGTGTCTTTACAAAAATCTGCAT 567609 >seq16 Length=823159 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || ||||||||||| || || || | ||| ||| || | |||| Sbjct 228483 TGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCAAGTTGT 228542 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||| ||||| ||||| || || || || || ||||| ||||| ||| Sbjct 228543 TTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTTT 228602 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | ||||| || ||||| || || || |||| ||||| || || Sbjct 228603 TGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAGT 228661 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| |||||||| Sbjct 228662 CAGCGTTTTAACAAAGATTTGCAT 228685 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||||||||| || || || | ||| ||| || | ||| Sbjct 228710 ATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCAAGTTG 228769 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| || | ||||| ||||| ||||| || || || || || ||||| ||||| || Sbjct 228770 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 228829 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| |||| || | || | ||||| || ||||| || || || |||| ||||| || | Sbjct 228830 TTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAG 228888 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| ||||| |||||||| Sbjct 228889 TCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||||||||| || || || | ||| ||| || | ||| Sbjct 228938 ATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCAAGTTG 228997 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| || | ||||| ||||| ||||| || || || || || ||||| ||||| || Sbjct 228998 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 229057 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| |||| || | || | ||||| || ||||| || || || |||| ||||| || | Sbjct 229058 TTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAG 229116 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| ||||| |||||||| Sbjct 229117 TCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||||||||| || || || | ||| ||| || | ||| Sbjct 229166 ATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCAAGTTG 229225 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| || | ||||| ||||| ||||| || || || || || ||||| ||||| || Sbjct 229226 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 229285 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| |||| || | || | ||||| || ||||| || || || |||| ||||| || | Sbjct 229286 TTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAG 229344 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| ||||| || ||||| Sbjct 229345 TCAGCGTTTTGACAAAGATCTGCAT 229369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002793197120