Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq16 111 2e-19 seq56 93.3 5e-14 >seq16 Length=823159 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| ||| |||||||||||| |||||||| || | ||||| | || || Sbjct 228477 ACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228536 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || || || || || ||||| || || ||||| | || | | |||||| ||| Sbjct 228537 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 228596 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | ||||| ||| | | | ||||| || || || || | || || ||||| Sbjct 228597 ATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 228655 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||||||||||||||||||||| Sbjct 228656 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||||||||| |||||||| || | ||||| | || || Sbjct 228705 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228764 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || || || || || ||||| || || ||||| | || | | |||||| ||| Sbjct 228765 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 228824 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | ||||| ||| | | | ||||| || || || || | || || ||||| Sbjct 228825 ATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 228883 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||||||||||||||||||||| Sbjct 228884 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||||||||| |||||||| || | ||||| | || || Sbjct 228933 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228992 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || || || || || ||||| || || ||||| | || | | |||||| ||| Sbjct 228993 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 229052 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | ||||| ||| | | | ||||| || || || || | || || ||||| Sbjct 229053 ATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 229111 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||||||||||||||||||||| Sbjct 229112 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||||||||| |||||||| || | ||||| | || || Sbjct 229161 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 229220 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || || || || || ||||| || || ||||| | || | | |||||| ||| Sbjct 229221 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 229280 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | ||||| ||| | | | ||||| || || || || | || || ||||| Sbjct 229281 ATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 229339 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||||||||| |||||||| |||||||| Sbjct 229340 ACCAGTCAGCGTTTTGACAAAGATCTGCATTTT 229372 >seq56 Length=671324 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| | || || | || || || ||||| ||||| || Sbjct 567799 TCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTACCGGCAAAA 567740 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521 ||||| || ||||| || | || | | ||||| ||| |||||| || || | || | Sbjct 567739 ATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTT-TTGTTTAACGTT 567681 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || |||||||| || | |||||||| || || || || || || || Sbjct 567680 ATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTAC 567621 Query 46582 AAAGATTTGCATTTTGCACAAACAA 46606 ||| || |||||| | | |||||| Sbjct 567620 AAAAATCTGCATTCTAAAAAAACAA 567596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237891285440