Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq16 174 2e-38 seq56 107 2e-18 >seq16 Length=823159 Score = 174 bits (192), Expect = 2e-38 Identities = 567/872 (65%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 132624 TTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||| || ||||| || || || || | || ||||| | |||||| || || || || Sbjct 376813 TTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAATGGATT 376872 Query 132684 GGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 | ||||||||| |||| | ||| | | |||||| || ||||| || ||||| Sbjct 376873 CTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAACAAACTC 376932 Query 132744 GATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803 |||||||| |||| | | | || | ||| | ||| || |||| || || || Sbjct 376933 AATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGACTCTGT 376992 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 | || ||| || ||| | || || || || || |||| || ||| | Sbjct 376993 CAAGAACTTTTGTTCAATGACAACAGCCTCAAGCACAATGCCCCTGACCTTGGCCTCAGA 377052 Query 132864 CGGCC-GTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 ||| ||||| | ||| |||| | || || |||||||| || || || || | Sbjct 377053 AGGCTTGTTGCTG-AGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACCCTTCAT 377111 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | | |||| || || ||| ||| || | || ||||| || || | |||||||||| Sbjct 377112 CGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTTTGAGCC 377171 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | || || || || || || |||||||| | ||||| || | || || ||| ||| Sbjct 377172 AGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACGCCGCCA 377231 Query 133043 GGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 ||||| || || | || || | | | ||||| ||| ||||| | ||||||| Sbjct 377232 AACGCTCACCAAATGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCACTTTGCCTTTT 377291 Query 133103 CTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC 133162 || | |||||| || | || || ||||| |||| || |||||| || Sbjct 377292 CTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTCTGCCTCATCTT 377351 Query 133163 GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTT 133222 | | ||| ||||| | || || |||||||| ||| | |||||| || ||||| Sbjct 377352 GAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAATCATGATTT 377411 Query 133223 GAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA--CGCTCGAC 133280 | || || || || || | ||||| | ||| || || | || ||| |||| || Sbjct 377412 GGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCAT-TGCTAAAGTTGCTC-AC 377469 Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 ||| ||||| ||||| || || || ||| || || || || || | || |||||| || Sbjct 377470 CAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCTTGATAAA 377529 Query 133341 ATGGCGCTCGTTGTCGTTCAAGC-GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCT 133399 | |||||| ||| | |||| ||||||| |||| | || || ||||||| Sbjct 377530 GTAACGCTCG-TGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGATCCACCT 377588 Query 133400 CCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATT 133459 |||| || |||| || ||||| || || |||||||||||| |||||| || || | Sbjct 377589 CCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCATGGTACT 377648 Query 133460 GTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491 || || || | |||||| | || |||||| Sbjct 377649 TGATTGGGAACAGCACAAATCTGCTTGGGTTT 377680 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || |||||||| || || ||||| || ||| | || || ||| | Sbjct 229373 AAAAATGCAGATCTTTGTCAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTC 229314 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | |||| | | |||| | || |||| || | || || ||||| || || | | Sbjct 229313 CTCAGACACAATCGACAACG-TCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAG 229255 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 ||||||| || | |||| || || ||||| || || || | |||||| | |||| Sbjct 229254 ACCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACT 229195 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||||| | || || |||||||| || ||| Sbjct 229194 ACAACATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGT 229154 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||||||| || || ||||| || ||| | || || ||| || | Sbjct 228685 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228626 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || |||| || | || || ||||| || || | ||||| Sbjct 228625 GACACAATCGACAACG-TCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 228567 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || ||||| || || || | |||||| | |||||||| Sbjct 228566 ACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAA 228507 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || ||||| ||||| || ||| Sbjct 228506 CATCCAAAAGGAGTCTACCCTGCACTTGGTACTTCGT 228470 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||||||| || || ||||| || ||| | || || ||| || | Sbjct 228913 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228854 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || |||| || | || || ||||| || || | ||||| Sbjct 228853 GACACAATCGACAACG-TCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 228795 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || ||||| || || || | |||||| | |||||||| Sbjct 228794 ACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAA 228735 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || |||||||| || ||| Sbjct 228734 CATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGT 228698 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||||||| || || ||||| || ||| | || || ||| || | Sbjct 229141 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 229082 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || |||| || | || || ||||| || || | ||||| Sbjct 229081 GACACAATCGACAACG-TCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 229023 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || ||||| || || || | |||||| | |||||||| Sbjct 229022 ACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAA 228963 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || |||||||| || ||| Sbjct 228962 CATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGT 228926 >seq56 Length=671324 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| || || || || || ||||||||| |||| || || | | Sbjct 567608 AATGCAGATTTTTGTAAAGACACTAACTGGGAAGACCATCACCCTCGAGGTGGAATCTTC 567667 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| ||||| |||| |||| || || || ||||||||| | || | Sbjct 567668 AGATACCATCGATAACG-TTAAACAAAAGATCCAGGATAAGGAAGGAATTCCCCCAGATC 567726 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | |||| || || || || || || || | || ||| | |||||||| Sbjct 567727 AGCAACGTTTGATTTTTGCCGGTAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACA 567786 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | || || || ||||| || ||| Sbjct 567787 ACATCCAAAAGGAATCCACTCTTCACTTGGTACTCCGT 567824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172349844480