Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 172 7e-38 seq16 132 6e-26 >seq7 Length=1083452 Score = 172 bits (190), Expect = 7e-38 Identities = 572/870 (66%), Gaps = 26/870 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTC-GCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||||| || | ||| | || ||| | || ||||||||||| ||||| || || || Sbjct 948349 CCACAGTACTTGATTATGAGAGTTAGCGTTGGG-ATCCATGGGGACGATATAGAGTCGGT 948407 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | | ||||| || ||| |||||| | |||| | || || ||||||| || || Sbjct 948408 TATTGAGACGTATAACATGATGTCGCAGAAGCTGTTTACGCATGCCTCACCAACGCTGTT 948467 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGG-AGG 111789 ||| | |||||| | | || || |||| || || ||| |||| || | | ||| Sbjct 948468 TAACTCGGGTACAACGCGTCCGCAGTTGTC--GTCGTG--CTTTTTGCTGACGATGCAGG 948523 Query 111790 AT---TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGG 111846 || || || | || ||||||| || || | ||||||| || ||||||| | Sbjct 948524 ATGACTCTATTGAAGGGATTTACGATACACTGAAGCAATGTGCGATGATATCAAAGTCAG 948583 Query 111847 CTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAG-AGG 111904 | || || || || || | ||| | |||| || |||| | |||||| ||| ||| Sbjct 948584 CAGGAGGAATTGGTCTGAGTGTGCATAACATCAGGGC-AACA-GACTCGTACATAGCAGG 948641 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 || || || ||| |||| || | |||||||| || ||||| ||| ||||| | Sbjct 948642 AACGAACGGGACATCGAATGGGATAGTGCCAATGCTCCGAGTATTCAACCATACAGCAAG 948701 Query 111965 CTATGTAAACCAAGCTGGGCGTC----GCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 ||||| |||||| || | || |||| | | || | || || ||||||| Sbjct 948702 GTATGTGGACCAAGGAGGAAATAAGAGGCCAGGGGCATTT-GCGATATACCTGGAGCCAT 948760 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTT-GCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||||||| ||| | ||||| ||||||| ||| ||||| || | |||||| Sbjct 948761 GGCACGCGGACATCTTTGAGTTT-TTGAGTTTGCGCAAGAACCACGGAAAGGAGGAGAAC 948819 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || || || | || | | | |||||||| ||| | || |||||| | || | Sbjct 948820 AGGGCACGTGACTTGTTTTATGGAATGTGGATTCCGGATTTGTTTATGAAGCGGGTGCTG 948879 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 || | | | | ||| | | || || ||| || |||| || ||| ||| | | Sbjct 948880 GACAATAGGGACTGGAGTTTGTTCTGCCCACACGAGGCGCCAAATCTACACGAGGTTTGG 948939 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA---AGAAAGTCGGGCGACTGCG 112256 || ||||||||||| || | ||||||||||||||| | ||| | | ||| | | Sbjct 948940 GGAGAGGAGTTTGAGGCATTGTACACAAAGTACGAGAACACAGAGGGGCTGGCAAGAAAG 948999 Query 112257 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | ||| ||||| | ||||| | || ||||| | || || | || || || ||| Sbjct 949000 AAGGTTCCAGCACAGCAGCTGTGGTACGCGATTCTGGACTCGCAGATTGAAACAGGAACA 949059 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || || ||||| |||||||| || || || ||| || || |||| ||||| Sbjct 949060 CCGTACATGCTGTACAAAGATGCGTGCAATGGCAAGTCAAACCAGCAGAACCTGGGTACA 949119 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA-GATGAGACGGC 112435 |||||||| ||||| | |||||||| || | || | || | |||| || ||| ||| Sbjct 949120 ATCAAGAGCTCCAATTTGTGTACAGAGATTGTCGAGTACAC-GTCAAACGACGAGGTGGC 949178 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCC 112465 || || ||| | || ||||| || || || Sbjct 949179 GGTTTGCAACTTGGCGTCAATTGCACTGCC 949208 >seq16 Length=823159 Score = 132 bits (146), Expect = 6e-26 Identities = 300/438 (68%), Gaps = 10/438 (2%) Strand=Plus/Minus Query 101899 ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAACT 101958 ||||||| ||||||||||||| || ||||||||||| ||| || | | ||||| Sbjct 377519 ACATCCTAGCATTCTTTGCTGCCTCGGATGGAATTGTCAATGAAAACCTGGTGAGCAACT 377460 Query 101959 TTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAAT 102017 || ||||||| || || | | || || |||| |||||||| || ||| |||| || Sbjct 377459 TTAGCAATGAGGTACAGATTC-CAGAGGCAAGATGTTTCTATGGGTTCCAAA-TCATGAT 377402 Query 102018 -GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 102076 || | | || | || | ||| || | |||| || ||| | |||| || Sbjct 377401 TGAGAACATTCACAGCGAAATGTACTCACTGCTGCTGGACACATACATTCAAGATGAGGC 377342 Query 102077 TGAGAAGAAGCAGCTCTTTGAAGCCATCCA-AACAGTTCCATGTATTCAAAAGAAAGCGG 102135 |||||||| || || ||| | || || | |||| |||| || ||| | | || || Sbjct 377341 AGAGAAGAACCACCTGTTTAACGCAATTGACAACA-TTCCGTGCATTGGAGAAAAGGCAA 377283 Query 102136 ATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 102194 | ||||| |||||||| ||||| || | | || | |||| |||||| | || Sbjct 377282 AGTGGGCCCTGAAGTGGATTGATGACGATGAGGCAC-CATTTGGTGAGCGTTTGGCGGCG 377224 Query 102195 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAA 102253 ||||| ||||||||||| ||||| || || || || ||| || |||| |||||||| Sbjct 377223 TTTGCAGTAGTTGAGGGTATTTTCTTTTCAGGATCGTT-TGCAGCAATTTTCTGGCTCAA 377165 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||| || |||||||| || |||||||| |||||||| | || || || || Sbjct 377164 AAAGAGAGGGCTGATGCCAGGACTTACATTCTCCAATGAGCTTATTTGCCGCGATGAAGG 377105 Query 102314 ACTCCACCAAGAGTTTGC 102331 | ||| ||| ||||| Sbjct 377104 GTTACACACAGACTTTGC 377087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741841331840