Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq56 134 3e-26 seq16 127 5e-24 seq33 89.7 1e-12 >seq56 Length=671324 Score = 134 bits (148), Expect = 3e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||||||||| || ||||| || ||||| |||| |||| || | ||||| || || | Sbjct 567812 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTACGGCCATCCTCAAGTT 567754 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| || || || | ||||| || ||||| ||||| ||||| || || || || | Sbjct 567753 GCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCT 567694 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 |||| || ||||| || ||||| || ||| |||||| || ||||| | ||||| || | Sbjct 567693 TTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCTTCCCAG 567634 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 | | || ||||| || | |||||| Sbjct 567633 TTAGTGTCTTTACAAAAATCTGCATT 567608 >seq16 Length=823159 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || ||||| ||||| || ||||| || | |||| || | ||||| || || || Sbjct 228711 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGGCCATCCTCAAGTTG 228769 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || | |||||||||||||| || || || || || || ||||| || Sbjct 228770 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 228829 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || || ||||| || || || |||||||||| || || || || Sbjct 228830 TTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAGT 228889 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | |||||| Sbjct 228890 CAGCGTTTTAACAAAGATTTGCAT 228913 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || ||||| ||||| || ||||| || | |||| || | ||||| || || || Sbjct 228939 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGGCCATCCTCAAGTTG 228997 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || | |||||||||||||| || || || || || || ||||| || Sbjct 228998 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 229057 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || || ||||| || || || |||||||||| || || || || Sbjct 229058 TTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAGT 229117 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | |||||| Sbjct 229118 CAGCGTTTTAACAAAGATTTGCAT 229141 Score = 125 bits (138), Expect = 2e-23 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || ||||| ||||| || ||||| || | |||| || | ||||| || || || Sbjct 229167 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGGCCATCCTCAAGTTG 229225 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || | |||||||||||||| || || || || || || ||||| || Sbjct 229226 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 229285 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || || ||||| || || || |||||||||| || || || || Sbjct 229286 TTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAGT 229345 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 || ||||| || || | ||||||| Sbjct 229346 CAGCGTTTTGACAAAGATCTGCATTT 229371 Score = 123 bits (136), Expect = 6e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || || ||||| ||||| || ||||| || | |||| || | ||||| || || | Sbjct 228482 GTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGGCCATCCTCAAGTT 228540 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 | || || || || || | |||||||||||||| || || || || || || ||||| | Sbjct 228541 GTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCT 228600 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 ||||||||||||| || || ||||| || || || |||||||||| || || || | Sbjct 228601 TTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAG 228660 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || | |||||| Sbjct 228661 TCAGCGTTTTAACAAAGATTTGCAT 228685 >seq33 Length=522307 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || || || || || |||||||| ||||| || | |||||| | |||||||| Sbjct 111566 AACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGTCCATCTTC 111507 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||| || || ||||| ||||| | ||||| || ||||| ||||| ||| Sbjct 111506 GAGTTGTTTTCCTGCAAAGATCAAACGTTGCTGATCTGGTGGAATTCCT 111458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480576503224