Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 239 8e-58 seq16 150 3e-31 >seq7 Length=1083452 Score = 239 bits (264), Expect = 8e-58 Identities = 572/857 (67%), Gaps = 36/857 (4%) Strand=Plus/Minus Query 212556 GTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGG 212615 ||||||| | || ||| || |||| |||||| || || ||||||||||||||||| || Sbjct 950159 GTAAACTTGATTGCATCGGCGGCAGGCTTGGTTCGCAGGTAGTACATGCCGGTCTTGAGC 950100 Query 212616 CCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCA 212675 ||||| |||||| | | ||||| ||||||||||| || | ||| Sbjct 950099 CCCTTCTTCCAGCCATAGAAATGCATGCTTGTGAGTTTCTGG-------TAGTTTGGA-- 950049 Query 212676 TCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCA 212735 | | ||| || | ||| || ||||| ||||| ||| | | | ||| |||| Sbjct 950048 ------TTGTCCATGTGGATGTTTAGCGACTGCGATTGGTCAATGTAAGCGCCCCGGTCA 949995 Query 212736 GCGGCCATGTCTATGATA-TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTT 212794 || | | ||| |||| | ||| |||| || ||| |||| || ||| | | || || Sbjct 949994 GCTGATAGGTCAATGACAATCT-TCTGCTTGATCTCGTACACAGTTTTGTACAGCTCCTT 949936 Query 212795 GAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAG 212854 ||||| ||| | || ||||| ||| |||||||| ||||| | | | | Sbjct 949935 CAGGTCAGATGGAATTTCGTTGATGTACTGTACAGACCCGTTGTGTGCAATTATGGCCTG 949876 Query 212855 GCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAG--GCACT-TGACCAGGTGAGGGTT 212911 ||||||||| || ||| | | | |||||| | || | | ||| ||||| Sbjct 949875 GCGCATGTCGTCCGACCACAA---CTTTCTCTCCACAAGGTCTCTCAGCAGCCACGGGTT 949819 Query 212912 GACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTC 212971 ||||| |||||| ||||||| || || || || ||||| |||||| ||||| ||||| Sbjct 949818 GACTACCTGGAACTCACCTGCAAGAACTCTTCTTGTGTAAATGTTTGAGGTGTATGGCTC 949759 Query 212972 GATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAG 213031 | || |||||||| |||||||||||| | || ||||| ||||| || |||| ||| Sbjct 949758 AAAGCACTCGTTGTACCCCAGAATCTGCGATGTTGACGCTGTAGGCATTGGCGCCAGCAG 949699 Query 213032 GAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCT 213091 || ||| || ||||| || | | || ||| |||||||||||||||| Sbjct 949698 CAGCGAGTTTCTGACTCCATGTTTTGCTATCTTTTGCCTCAGCTCTGCCCAGTCCC---- 949643 Query 213092 GCCAGACAGGTC-CTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCA 213150 ||||||| || | || || ||||| || | ||| | | |||||||||| Sbjct 949642 -----ACAGGTCGCTTG-GCTCAACTCCCCACAGATCCATCTGTAGTTTTCCTTTGCTCA 949589 Query 213151 CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCT 213210 || ||||||| ||| | |||||||| || | || | | ||||| ||||| ||| | | Sbjct 949588 TTGGACTGCCCTCGTATGTCGAGTAGGGTCCGTTCTTCATTGCCAGTTCGCACGACACTT 949529 Query 213211 GCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGG 213270 || || |||| ||| | ||| || || ||| | ||||||||| ||||||| | | Sbjct 949528 CAAGAGCTGCGTGGTACAGGGTCTCGAAAATCAGCTTGTTGAGCTCCTTGGCCCCCTCAG 949469 Query 213271 ACGTGAAGGGCATCATCATGCGT-TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCG 213329 || || |||| | ||| || | ||| | || |||||||| || ||||| || || Sbjct 949468 ACTCAAACGGCAGCCTCA-GCATCAAAAACGCGTCGGCCAGCCCTTGAACCCCCATCCCA 949410 Query 213330 ATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCG 213389 || || | |||||||| ||| || || ||||| | ||||| |||| || Sbjct 949409 ATTGGCCGGTGTCTCATGTTTGAGTTTTCCGCCTCCTTGATTGGGTAGTAGTTCACATCA 949350 Query 213390 ATGATCTTGTTGAGGTT 213406 |||||||||| ||||| Sbjct 949349 ATGATCTTGTCCAGGTT 949333 Score = 145 bits (160), Expect = 1e-29 Identities = 507/777 (65%), Gaps = 17/777 (2%) Strand=Plus/Minus Query 213471 ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGT 213529 |||||| | ||||| || || |||| ||||||||| |||||||| | | | | || Sbjct 949217 ACAAACGCTGGCAGTGCAATTGACGCCAAGTTGCAAACCGCCACCTCGTCGTTTGAC-GT 949159 Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| | ||||| || |||| ||| || ||| || ||||||||||| ||||| Sbjct 949158 GTACTCGACAATCTCTGTACACAAATTGGAGCTCTTGATTGTACCCAGGTTCTGCTGGTT 949099 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGA 213649 |||||| | ||| | ||| ||||| |||||||| || | || || || | ||| || Sbjct 949098 TGACTTGCCATTGCACGCATCTTTGTACAGCATGTACGGTGTTCCTGTTTCAATCTGCGA 949039 Query 213650 CACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCG--CCTGACAGCTCCGGGC 213707 |||| ||| | ||| || | | || || || | | | || |||| || Sbjct 949038 GTCCAGAATCGCGTACCACAGCTGC-TGTGCTGGAACCTTCTTTCTTGCCAGCCCCTCT- 948981 Query 213708 GTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCC 213767 || |||||||| | ||| | | | || || | ||||| ||| || || Sbjct 948980 GTGTTCTCGTACTTTGTGTACAATGCCTCAAACTCCTCTCCCCAAACCTCGTGTAGATTT 948921 Query 213768 GGA-CAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAA 213826 || | || ||| || | | |||||||||| | || || | || ||| || Sbjct 948920 GGCGCCTCGTGTGGG-CAGAACAAACTCCAGTCCCTATTGTCCAGCACCCGCTTCATAAA 948862 Query 213827 CAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGA 213886 || ||||| | ||||| | |||| ||| | | ||| |||| ||| ||| Sbjct 948861 CAAATCCGGAATCCACATTCCATAAAACAAGTCACGTGCCCTGTTCTCCTCCTTTCCGTG 948802 Query 213887 GTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGC 213946 ||| ||||||| | | ||| |||||||||||||||||||| ||||||| ||| || || Sbjct 948801 GTTCTTGCGCAAACTCAAAAACTCAAAGATGTCCGCGTGCCATGGCTCCAGGTATATCGC 948742 Query 213947 AAAGGCGCCCGGCCTC---TTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGAT 214003 ||| || || |||||| || || || |||||||| ||| || |||||| | Sbjct 948741 AAATGCCCCTGGCCTCTTATTTCCTCCTTGGTCCACATACCTTGCTGTATGGTTGAATAC 948682 Query 214004 GCGCAGGACGGGTACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGG 214062 || || | || || | ||| || || ||| ||||| ||||| ||||| |||||| | | Sbjct 948681 TCGGAGCATTGGCACTATCCCATTCGA-TGTCCCGTTCGTTCCTGCTATGTACGAGTCTG 948623 Query 214063 AGGCCCTCAGGT--TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGC 214120 ||||| | || ||| || ||| || || || || || |||| || ||||| || Sbjct 948622 TTGCCCTGATGTTATGCACACTCAGA--CCAATTCCTCCTGCTGACTTTGATATCATCGC 948565 Query 214121 GCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAA 214180 || || ||| || || || || | || |||||| | ||||||| || Sbjct 948564 ACATTGCTTCAGTGTATCGTAAATCCCTTCAATAGAGTCATCCTGCATCGTCAGCAAAAA 948505 Query 214181 GCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATG 214237 ||| ||| | ||| || | | | || ||||| || ||||| || |||||| Sbjct 948504 GCACGACGACAACTGCGGACGCGTTGTACCCGAGTTAAACAGCGTTGGTGAGGCATG 948448 >seq16 Length=823159 Score = 150 bits (166), Expect = 3e-31 Identities = 402/611 (66%), Gaps = 5/611 (1%) Strand=Plus/Plus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| ||| || || |||| ||||||| |||| || | ||||||| || || Sbjct 376910 AGCAGTCTATCGGCAACAAACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATC 376969 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || || || ||||| | || ||| | |||| | || || || || || |||| Sbjct 376970 AGCGATACTGGCAACGACTCTGTCAAGAACTTTTGTTCAATGACAACAGCCTCAAGCACA 377029 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | | || || ||| || || ||||||| || || || | |||| ||| Sbjct 377030 ATGCCCCTGACCTTGGCCTCAGAAGGCTTGTTGCTGAGATGGCTGA---ATAGCAGACAG 377086 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| |||| || ||||| || |||| || ||| | |||||||| || || Sbjct 377087 GCAAAGTCTGTGTGTAACCCTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCT 377146 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | ||| |||| |||||||||||||||||| || || || || || ||||| || Sbjct 377147 GGCATCAGCCCTCTCTTTTTGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATA 377206 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| ||| | || ||||| | | | ||| || || | || | | ||| ||| Sbjct 377207 CCCTCAACTACTGCAAACGCCGCCAAACGCTCACCAAATGGTGCCTCATCGTCATCAATC 377266 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCT-TGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 || || ||||| | |||||| |||| ||||| || || | || || || || Sbjct 377267 CACTTCAGGGCCCACTTTGCCTT-TTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAA 377325 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 || | || ||| | | || || || || |||||| || |||||| || Sbjct 377326 CAGGTGGTTCTTCTCTGCCTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTC 377385 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||| | ||||| || ||| |||||||| ||||| || ||||| | ||| Sbjct 377386 GCTGTGAATGTTCTCAATCATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTG 377445 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || || || | || ||| || |||||||| || ||||| || |||||||| Sbjct 377446 TACCTCATTGCTAAAGTTGCTCACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAA 377505 Query 48553 GAAGGCAAGGA 48563 ||| || |||| Sbjct 377506 GAATGCTAGGA 377516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531961620480