Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 107 6e-18 seq7 95.1 4e-14 seq56 84.2 6e-11 >seq3 Length=595855 Score = 107 bits (118), Expect = 6e-18 Identities = 177/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||||||| || | ||||| | ||||||||| || || |||||| || ||||| Sbjct 329601 CATAATGTCCTCAAGGGCCTTGACAAGACGACGCTGGATGTACCCAGTTTCAGCAGTTTT 329542 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || || ||||| ||||| |||||||||||||||| |||||| | | || | || Sbjct 329541 GACGGCAGTGTCAATAAGACCCTCACGACCACCCATAGCGTGGAAGTAGAATTCCT-GGG 329483 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 ||| || || | | | ||| |||| || || || | || |||||| | |||| Sbjct 329482 GCGTGAGACCGCGCAGGTACGAGTTCTCGACAAAGCCTCTGCTCTGGGGCGAGTAGTCGT 329423 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 |||||| ||||| ||||| || | ||| | || |||| || || | || |||| Sbjct 329422 CCTTGGTGAAGTGGGGCAGCGTGCGGTTGCGGAACCCAAATGGAATTCGTCTACCCTCAA 329363 Query 302804 CGTTCTGCTGTCC 302816 | |||||||| || Sbjct 329362 CATTCTGCTGCCC 329350 Score = 91.5 bits (100), Expect = 4e-13 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 301828 CGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTC 301887 || || |||||| |||||||||| ||||| | ||||| ||||||||||| || || Sbjct 330362 CGCGGCACACCAAGGGTTACGTTT---TTGGAGGACACACCTGCAAAGTGGAACGTGTTG 330306 Query 301888 AGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCT 301947 || || | |||||||| |||||||||||| || || |||| | || |||||||| Sbjct 330305 AGCGTCATTTGAGTAGCGGGCTCACCAATAGACTGGGCAGCAAGAGTGCCGACCATTTCC 330246 Query 301948 CCTGGTGCTACAATAG 301963 || || || |||| || Sbjct 330245 CCAGGAGCAACAAGAG 330230 >seq7 Length=1083452 Score = 95.1 bits (104), Expect = 4e-14 Identities = 486/766 (63%), Gaps = 18/766 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGT----CGCTGTATTCTACAATC 155642 |||| ||||||| || || ||||| | ||| ||||| || |||| || |||||| Sbjct 949201 CAATTGACGCCAAGTTGCAAACCGC---CACCTCGTCGTTTGACG-TGTACTCGACAATC 949146 Query 155643 TCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTA 155702 || |||| || || |||||||| || || | |||| |||||| || || | || Sbjct 949145 TCTGTACACAAATTGGAGCTCTTGATTGTACCCAGGTTCTGCTGGTTTGACTTGCCATTG 949086 Query 155703 CAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTT 155762 || ||||| ||||| || ||||| || |||||||| || ||||| | |||||||||| Sbjct 949085 CACGCATCTTTGTACAGCATGTACGGTGTTCCTGTTTCAATCTGCGAGTCCAGAATCGCG 949026 Query 155763 AGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCT-TCCGA---CTCATATTT 155818 ||| || | | || || | ||| | | | ||| || | ||| || || Sbjct 949025 TACCACAGCTGCTGTGCTGGAACCTTCTTTCT-TGCCAGCCCCTCTGTGTTCTCGTACTT 948967 Query 155819 CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGG 155878 | |||| | | ||||| || || || || || || | || Sbjct 948966 TGTGTACAATGCCTCAAACTCCTCTCCCCAAACCTCGTGTAGATTTGGCGCCTCGTGTGG 948907 Query 155879 GCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCA 155938 ||| |||| ||| |||| | | || |||| |||||| | ||| ||| Sbjct 948906 GCAGAACAAACTCCAGTCCCTATTGTCCAGCACCCGCTTCATAAACAAATCCGGAATCCA 948847 Query 155939 AATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAG-CT 155997 || |||| || | ||| | |||| | |||||| | ||||| ||||| || | || Sbjct 948846 CATTCCATAAAACAAGTCACGTGCCCTGTTCTCCTCCTTTCCGTGGTTCTTGCGCAAACT 948787 Query 155998 CTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC 156057 | || || || || || | || ||||||||| || || ||||| || || Sbjct 948786 CAAA-AACTCAAAGATGTCCGCGTGCCATGGCTCCAGGTATATCGCAAATGCCCCTGGCC 948728 Query 156058 TCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA 156114 |||| || || || || ||||||| || || | ||||| || | ||||| || | Sbjct 948727 TCTTATTTCCTCCTTGGTCCACATACCTTGCTGTATGGTTGAATACTCGGAGCATTGGCA 948668 Query 156115 TAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTAT 156174 || ||||| || || || || ||||| || | ||| | | || | | |||| Sbjct 948667 CTATCCCATTCGATGTCCCGTTCGTTCCTGCTATGTACGAGTCTGTTGCCCTGATGTTAT 948608 Query 156175 GAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234 | | | || ||||| || |||| | || || || || |||| ||| | |||| Sbjct 948607 GCACACTCAGACCAATTCCTCCTGCTGACTTTGATATCATCGCACATTGCTTCAGTGTAT 948548 Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAG 156294 | |||| ||||||||||| ||||| | ||| | || | | ||||||| || || | Sbjct 948547 CGTAAATCCCTTCAATAGAGTCATCCTGCATCGTCAGCAAAAAGCACGACGACAACTGCG 948488 Query 156295 GTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 | || | ||| || | ||| || || || |||| ||||| |||| Sbjct 948487 GACGCGTTGTACCCGAGTTAAACAGCGTTGGTGAGGCATGCGTAAA 948442 >seq56 Length=671324 Score = 84.2 bits (92), Expect = 6e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 ||| |||| ||| ||||| |||||||| ||||| | || || || || | | | || | Sbjct 379264 TTTGCCAATAGCGTCAATCTCGTCAATAAAAATGATGCATGGCGAGTTCTTTTTGGCGTT 379205 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 | ||| || || | || | ||||| |||| || ||| |||| |||||||| || || Sbjct 379204 GGAAAACAAGTCACGGACTCTTGATGCACCAACTCCTACAAACATCTCTACAAACTCCGA 379145 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || || ||||| || ||| || |||||| |||| | || || || || Sbjct 379144 GCCACTGACCGAAAAGAATGGGACTCCTGCCTCTCCTGCTGTTGCCTTTGCTAGCAGGGT 379085 Query 289206 CTTACCTGTTCCAGGTGGTCC 289226 || |||||||||||||| || Sbjct 379084 TTTTCCTGTTCCAGGTGGGCC 379064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816242248264