Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq16 152 5e-32 seq56 147 2e-30 seq7 91.5 1e-13 >seq16 Length=823159 Score = 152 bits (168), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||||||||| || |||||||| ||||| || || || || || | Sbjct 228685 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228626 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| || || || || || || || || || ||| Sbjct 228625 GACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAA 228566 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| || |||||| | | | |||| || || ||| Sbjct 228565 CAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAAC 228506 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || |||||||| Sbjct 228505 ATCCAAAAGGAGTCTACCCTGCACTTGGT 228477 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||||||||| || |||||||| ||||| || || || || || | Sbjct 228913 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228854 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| || || || || || || || || || ||| Sbjct 228853 GACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAA 228794 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| || |||||| | | | |||| || || ||| Sbjct 228793 CAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAAC 228734 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || || ||||| Sbjct 228733 ATCCAAAAGGAGTCTACCCTTCATTTGGT 228705 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||||||||| || |||||||| ||||| || || || || || | Sbjct 229141 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 229082 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| || || || || || || || || || ||| Sbjct 229081 GACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAA 229022 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| || |||||| | | | |||| || || ||| Sbjct 229021 CAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAAC 228962 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || || ||||| Sbjct 228961 ATCCAAAAGGAGTCTACCCTTCATTTGGT 228933 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | |||||||| || |||||||| ||||| || || || || || | Sbjct 229369 ATGCAGATCTTTGTCAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 229310 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| || || || || || || || || || ||| Sbjct 229309 GACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAA 229250 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| || |||||| | | | |||| || || ||| Sbjct 229249 CAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAAC 229190 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || || ||||| Sbjct 229189 ATCCAAAAGGAGTCTACCCTTCATTTGGT 229161 >seq56 Length=671324 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || ||||| || || || || || ||||| || ||| | | Sbjct 567609 ATGCAGATTTTTGTAAAGACACTAACTGGGAAGACCATCACCCTCGAGGTGGAATCTTCA 567668 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || |||||||||||||| || || |||||||| || || ||||| Sbjct 567669 GATACCATCGATAACGTTAAACAAAAGATCCAGGATAAGGAAGGAATTCCCCCAGATCAG 567728 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| |||||||| || || || |||||| | | | |||| || || ||| Sbjct 567729 CAACGTTTGATTTTTGCCGGTAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAAC 567788 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || |||||||| Sbjct 567789 ATCCAAAAGGAATCCACTCTTCACTTGGT 567817 >seq7 Length=1083452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 307/473 (65%), Gaps = 15/473 (3%) Strand=Plus/Minus Query 139402 ACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTA 139461 || ||| |||| |||| |||||||||||||| | | | ||| || || ||| | || Sbjct 948875 ACCCGCTTCATAAACAAATCCGGAATCCACATTCCATAAAACAAGTCACGTGCCCTGTTC 948816 Query 139462 TCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGT 139521 || ||| || ||| || | | || ||||| | ||| ||||||||||| Sbjct 948815 TCCTCCTTTCCGTGGTTCTTGCGCAAACTCAAAAACTCAAAGATGTCCGCGTGCCATGGC 948756 Query 139522 TCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACA 139578 ||||| || || || | ||| ||| || || || ||||| || || | | | | Sbjct 948755 TCCAGGTATATCGCAAATGCCCCTGGCCTCTTATTTCCTCCTTGGTCCACATACCTTGCT 948696 Query 139579 GCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCT 139634 | || |||||||| || | ||| ||| | | || ||| ||| ||||| || ||| Sbjct 948695 GTATGGTTGAATACTCGGAGCATTGGCACTATCCCATTCGATGTCCCGTTCGTTCCTGCT 948636 Query 139635 ACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAA 139694 | | | | | ||||||| | || || ||| ||| | | || ||||| || | | Sbjct 948635 ATGTACGAGTCTGTTGCC----CTGATGTTATGCACACTCAGACCAATTCCTCCTGCTGA 948580 Query 139695 TTTGGATATTAAAACGCA-ATCGCGTAA-TGTCTCGTATATACCTCTTATGCTGTCGTCC 139752 || ||||| | |||| || || | | ||| ||||| || ||| || ||| ||| Sbjct 948579 CTTTGATATCAT--CGCACATTGCTTCAGTGTATCGTAAATCCCTTCAATAGAGTCATCC 948522 Query 139753 TGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGA 139812 |||||||| | || |||||| ||||| | ||||| | | || || | |||||| Sbjct 948521 TGCATCGTCAGCAAAAAGCACGACGACAACTGCGGACGCGTTGTACCCGAGTTAAACAGC 948462 Query 139813 GTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGAT 139865 || || || ||||| |||| | | |||||||| | ||||| || || Sbjct 948461 GTTGGTGAGGCATGCGTAAACAGCTTCTGCGACATCATGTTATACGTCTCAAT 948409 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCGACAATTTCGG 139138 ||| || || | |||||| |||||||| |||||| | || |||| |||||||| || | Sbjct 949200 AATTGACGCCAAGTTGCAAACCGCCACCTCGTCGTTTGACG-TGTACTCGACAATCTCTG 949142 Query 139139 CACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAG 139198 ||||||||| | |||||| ||||| | || || || || || | || || | Sbjct 949141 TACACAAATTGGAGCTCTTGATTGTACCCAGGTTCTGCTGGTTTGACTTGCCATTGCACG 949082 Query 139199 CATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 |||||||||| ||||| |||||||| || ||||| Sbjct 949081 CATCTTTGTACAGCATGTACGGTGTTCCTGTTTC 949048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897195092160