Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq16 105 1e-16 seq17 89.7 8e-12 >seq16 Length=823159 Score = 105 bits (116), Expect = 1e-16 Identities = 179/258 (69%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 ||||| || ||||| || | || ||||| || | ||| || ||||||| ||| Sbjct 377423 AAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTTGCTCACCAGGTTTTCATTG 377482 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || || || || ||| || || || || |||| || ||||||||||| |||||||| Sbjct 377483 ACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCTTGATAAAGTAACGCTCGTGT 377542 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAA 796320 || ||| ||||||| | |||| ||| || |||||||| ||| |||| Sbjct 377543 TCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGATCCACCTCCTCAGCGTTCCAG 377602 Query 796321 AAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGA 796380 || || || || |||||||||||||| | ||| | | ||||| ||| |||||||| Sbjct 377603 AAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCATGGTACTTGATTGGGAACAGC 377662 Query 796381 ACAAAGC-GATTGGGGTT 796397 ||||| | | ||||| || Sbjct 377663 ACAAATCTGCTTGGGTTT 377680 >seq17 Length=507018 Score = 89.7 bits (98), Expect = 8e-12 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || ||||||||||| || || ||||| ||| |||||| ||| || | | Sbjct 300365 TGTATTTGGTTACAGCCTTGGTACCTTCGGAAACGGCATGCTTGGCCAATTCTCCAGGTA 300306 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTA-G 1485586 | || || || || || || || ||||| | ||| ||||| | ||||||| Sbjct 300305 GCAAAAGTCGGACAGCTGTTTGAATTTCGCGAGATGAGAT--TGTTGATCTCTTGTTATA 300248 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||| ||||| | || || | | || || || | || || |||||||| |||| Sbjct 300247 TGCG-GCCAGCTTGGATGCTTCTGAAGCAATACGCTCAAAAATATCATTGACAAAGGAGT 300189 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||| || ||||| | ||||| || || || ||| ||||| || || ||| |||| Sbjct 300188 TCAAAATTGACATGGCCTTGTTTGAAATACCGGTGTCTGGGTGGACTTGACGGAGTACCT 300129 Query 1485707 TGTAAA 1485712 |||||| Sbjct 300128 TGTAAA 300123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916238741031608