Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq16 116 2e-21 seq56 109 4e-19 >seq16 Length=823159 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| |||| ||| |||||| || ||||| ||||| || | | |||| |||| Sbjct 229158 AGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCC 229217 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||| || || |||| ||||| |||||| | || | ||||||||| || Sbjct 229218 TCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCC 229277 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | || | || || ||| || |||| ||| || || Sbjct 229278 TGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTT 229337 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || || || |||||||||||||| Sbjct 229338 TTACCAGTCAGCGTTTTGACAAAGATCTGCAT 229369 >seq56 Length=671324 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||| || ||||| ||||| || | | | || |||| Sbjct 567820 AGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 567761 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| || |||| |||||||| ||| | || | || ||||| || Sbjct 567760 TCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCC 567701 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTC-AT-TG--GCCTCGACATCAACGGTTAT 34941 | || |||||||| ||| ||||||| || || | || || || | ||| || Sbjct 567700 TGGATCTTTTGTTTAACGT----TATCGATGGTATCTGAAGATTCCACCTCGAGGGTGAT 567645 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || || ||||||||||| |||||||| Sbjct 567644 GGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCAT 567609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692514204568