Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq56 104 2e-17 seq16 89.7 4e-13 >seq56 Length=671324 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 |||| |||||| |||||||| || || |||| || || ||||| ||| |||| ||| Sbjct 567603 TTTAGAATGCAGATTTTTGTAAAGACACTAACTGGGAAGACCATCACCCTCGAGGTGGAA 567662 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 || ||||| ||| | || ||||||||||| ||||| ||||| | ||| Sbjct 567663 TCTTCAGATACCATCGATAACGTTAAACAAAAGATCCAGGATAAGGAAGGAATTCCCCCA 567722 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 |||||||| | | |||| ||| ||||| || || ||||| | | || || | ||| Sbjct 567723 GATCAGCAACGTTTGATTTTTGCCGGTAAGCAACTTGAGGATGGCCGTACCTTGTCCGAC 567782 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||||| |||||||| || || | ||| |||| Sbjct 567783 TACAACATCCAAAAGGAATCCACTCTTCACTTGGT 567817 >seq16 Length=823159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || || ||||| |||||| | || ||| | Sbjct 228685 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228626 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||||||| ||||| || || | || || || Sbjct 228625 GACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAA 228566 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | |||| ||| || ||||| || ||||| | | || || | ||||||||| Sbjct 228565 CAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAAC 228506 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||||||||| ||||| |||| Sbjct 228505 ATCCAAAAGGAGTCTACCCTGCACTTGGT 228477 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||||||||| | || || ||||| |||||| | || ||| | Sbjct 229372 AAAATGCAGATCTTTGTCAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCC 229313 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || ||||||||| ||||| || || | || || Sbjct 229312 TCAGACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGAC 229253 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || | | |||| ||| || ||||| || ||||| | | || || | |||||| Sbjct 229252 CAACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTAC 229193 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| |||||||||||||| Sbjct 229192 AACATCCAAAAGGAGTCTAC 229173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876449985608