Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq56 125 1e-23 seq16 116 7e-21 >seq56 Length=671324 Score = 125 bits (138), Expect = 1e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| ||||| ||||| || || || || || || || | | | || Sbjct 567824 ACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCC 567765 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || || ||||| || | | ||| |||||||| || ||||||||||| Sbjct 567764 ATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTT 567705 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || |||||| ||| || || || || ||||| || ||| || || | || || Sbjct 567704 ATCCTGGATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGAT 567645 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | ||||||||||| ||||||||| Sbjct 567644 GGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCATT 567608 >seq16 Length=823159 Score = 116 bits (128), Expect = 7e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || ||||| || || || || || || |||| Sbjct 229141 TACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 229200 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || || || ||||||||||||||||| || | | |||||| ||||| | Sbjct 229201 ACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 229260 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCT 82760 | || || |||||||| ||||||||| || || || || || || || | ||| || Sbjct 229261 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTC-TGAGGACTCA 229319 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 || || | || || || || || |||| ||| || ||||| ||||||||| |||| Sbjct 229320 ACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCATTTTTAT 229375 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || |||||||| ||||| || || || || || || ||||| | | | || Sbjct 228470 ACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCC 228529 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||||||||||||||| || | | |||||| ||||| || || || ||||| Sbjct 228530 ATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTT 228589 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTA 82773 ||| ||||||||| || || || || || || || | ||| || || || | || | Sbjct 228590 ATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTC-TGAGGACTCAACCTCAAGGGTAA 228648 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || |||| ||| || ||||| || ||||| Sbjct 228649 TTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 105 bits (116), Expect = 1e-17 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || ||||| || || || || || || |||| Sbjct 228685 TACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 228744 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || || || ||||||||||||||||| || | | |||||| ||||| | Sbjct 228745 ACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 228804 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCT 82760 | || || |||||||| ||||||||| || || || || || || || | ||| || Sbjct 228805 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTC-TGAGGACTCA 228863 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || || || || |||| ||| || ||||| || ||||| Sbjct 228864 ACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 105 bits (116), Expect = 1e-17 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || ||||| || || || || || || |||| Sbjct 228913 TACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 228972 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || || || ||||||||||||||||| || | | |||||| ||||| | Sbjct 228973 ACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 229032 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCT 82760 | || || |||||||| ||||||||| || || || || || || || | ||| || Sbjct 229033 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTC-TGAGGACTCA 229091 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || || || || |||| ||| || ||||| || ||||| Sbjct 229092 ACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826294264408