Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 154 1e-32 seq16 127 2e-24 seq56 84.2 2e-11 >seq7 Length=1083452 Score = 154 bits (170), Expect = 1e-32 Identities = 448/687 (65%), Gaps = 2/687 (0%) Strand=Plus/Minus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCC 148121 ||||||||| | ||||| |||||||| | | ||||||| ||| ||| ||||| Sbjct 950018 TGGTCAATGTAAGCGCCCCGGTCAGCTGATAGGTCAATGACAATCTTCTGCTTGATCTCG 949959 Query 148122 CAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAG 148181 | | || ||||||||| ||| | | | ||||| ||| |||| ||| || || Sbjct 949958 TACACAGTTTTGTACAGCTCCTTCAGGTCAGATGGAATTTCGTTGATGTACTGTACAGAC 949899 Query 148182 CCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGG 148241 ||| ||| |||| || | |||||| ||||||| | | || ||| | ||| Sbjct 949898 CCGTTGTGTGCAATTATGGCCTGGCGCATGTCGTCCGACCACAACTTTCTCTCCACAAGG 949839 Query 148242 TCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATAC 148301 || | ||| || | || || ||||| ||||| || || || || | | || Sbjct 949838 TCTCTCAGCAGCCACGGGTTGACTACCTGGAACTCACCTGCAAGAACTCTTCTTGTGTAA 949779 Query 148302 ACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCC 148361 | ||| || | || ||||| ||||||||| |||| |||||||| || | || Sbjct 949778 ATGTTTGAGGTGTATGGCTCAAAGCACTCGTTGTACCCCAGAATCTGCGATGTTGACGCT 949719 Query 148362 GTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTC 148421 || ||||| ||| | |||||||||||| | | || | ||| ||| || || || Sbjct 949718 GTAGGCATTGGCGCCAGCAGCAGCGAGTTTCTGACTCCATGTTTTGCTATCTTTTGCCTC 949659 Query 148422 AGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTC-ACGTTCCACATGTCGTACTGCAGAAT 148480 || | ||||||||||| || | || | || || ||||| || ||| || | Sbjct 949658 AGCTCTGCCCAGTCCCACAG-GTCGCTTGGCTCAACTCCCCACAGATCCATCTGTAGTTT 949600 Query 148481 GCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTC 148540 || ||| || ||||||||||| | ||| ||||||| | | |||||||| Sbjct 949599 TCCTTTGCTCATTGGACTGCCCTCGTATGTCGAGTAGGGTCCGTTCTTCATTGCCAGTTC 949540 Query 148541 GCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGC 148600 ||| | | || || || ||| ||| | |||||| ||| || |||||||| | Sbjct 949539 GCACGACACTTCAAGAGCTGCGTGGTACAGGGTCTCGAAAATCAGCTTGTTGAGCTCCTT 949480 Query 148601 CGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 ||| ||| || |||||| | |||| || |||||||||||| || || || || Sbjct 949479 GGCCCCCTCAGACTCAAACGGCAGCCTCAGCATCAAAAACGCGTCGGCCAGCCCTTGAAC 949420 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTG 148720 |||| ||||| ||||||||| | ||||| ||| ||| || || || |||| Sbjct 949419 CCCCATCCCAATTGGCCGGTGTCTCATGTTTGAGTTTTCCGCCTCCTTGATTGGGTAGTA 949360 Query 148721 GTTGCGGTCGATGATCTTGTCAAGATT 148747 ||| || ||||||||||| || || Sbjct 949359 GTTCACATCAATGATCTTGTCCAGGTT 949333 >seq16 Length=823159 Score = 127 bits (140), Expect = 2e-24 Identities = 344/520 (66%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||| || ||||| || |||||||| || ||||| | ||| ||||| ||| Sbjct 376795 CTGGTAGTCGGAAACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTC 376854 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 |||||| || || || || || ||| ||| ||| | |||| || |||||| Sbjct 376855 CATAAAGTCAAATGGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAG 376914 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGC-GTTCATGCCCAGCAACG 120529 || || || |||||||||||||| | |||||| | ||| | |||||| || | || || Sbjct 376915 TCTATCGGCAACAAACTCAATGTATTGGCACAT-CAGTGCACTGTTCATTCCGATCAGCG 376973 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 || ||||||| | || || |||| | |||||| | || ||||| | ||| Sbjct 376974 ATACTGGCAACGACTCTGTCAAGAACTTTTGTTCAATGACAACAGCCTCAAGCACAATGC 377033 Query 120590 C---GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 | || | | | | ||| | ||| | |||| | | ||| ||| || | Sbjct 377034 CCCTGACCTTGGCCTCAGAAGGCTTGTTG-CTGAGATG---GCTGAATAG--CAGACAGG 377087 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| ||||| | || || ||||| | || ||||| ||| || || || || | Sbjct 377088 CAAAGTCTGTGTGTAACCCTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTG 377147 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||| | ||| || | |||| |||| || || ||||| || |||||||| | | Sbjct 377148 GCATCAGCCCTCTCTTTTTGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATAC 377207 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 |||| || | ||||| || ||| ||||| | || | ||| | | || |||| Sbjct 377208 CCTCAACTACTGCAAACGCCGCCAAACGCTCACCAAATGGTGCCTCATCGTCATCAATCC 377267 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 |||||| |||||||| ||||||| | | |||||| || Sbjct 377268 ACTTCAGGGCCCACTTTGCCTTTTCTCCAATGCACGGAAT 377307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || || ||||| || || ||| | | | ||||| || Sbjct 229164 AAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCCTCAAG 229222 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | || || ||||| || ||||| || ||||| || || Sbjct 229223 TTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAAT 229282 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | || | ||||| | || ||| || || | ||| | ||||| || Sbjct 229283 CTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACC 229342 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || |||||||| Sbjct 229343 AGTCAGCGTTTTGACAAAGATCTGCAT 229369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || || ||||| || || ||| | | | ||||| || Sbjct 228708 AAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCCTCAAG 228766 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | || || ||||| || ||||| || ||||| || || Sbjct 228767 TTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAAT 228826 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | || | ||||| | || ||| || || | ||| | ||||| || Sbjct 228827 CTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACC 228886 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || || ||||| Sbjct 228887 AGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || || ||||| || || ||| | | | ||||| || Sbjct 228936 AAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCCTCAAG 228994 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | || || ||||| || ||||| || ||||| || || Sbjct 228995 TTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAAT 229054 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | || | ||||| | || ||| || || | ||| | ||||| || Sbjct 229055 CTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACC 229114 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || || ||||| Sbjct 229115 AGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || ||||| || || ||| | | | ||||| || Sbjct 228480 AAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCCTCAAG 228538 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | || || ||||| || ||||| || ||||| || || Sbjct 228539 TTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAAT 228598 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | || | ||||| | || ||| || || | ||| | ||||| || Sbjct 228599 CTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACC 228658 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || || ||||| Sbjct 228659 AGTCAGCGTTTTAACAAAGATTTGCAT 228685 >seq56 Length=671324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || || ||||| ||| || || | | | ||||| || ||||| || Sbjct 567805 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCA-TCCTCAAGTTGCTTACC 567747 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||| || || || || |||||||| || ||||||||| || Sbjct 567746 GGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTTTGTTT 567687 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | | ||||| |||| ||||| ||| || || || || || Sbjct 567686 AACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCTTCCCAGTTAGTGT 567627 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||| ||||||||||| Sbjct 567626 CTTTACAAAAATCTGCAT 567609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420364921280