Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq56 120 2e-22 seq16 113 3e-20 >seq56 Length=671324 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||||| || |||||| || ||||| |||||||| |||| Sbjct 567837 CACCACCACGGAGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGG 567778 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || || | || || | ||| || ||||||||||||||||| ||||||||| | | Sbjct 567777 ACAAGGTACGGCCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGG 567718 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| || || || || ||||| ||| | || | ||| || |||||| Sbjct 567717 GAATTCCTTCCTTATCCTGGATCTTTTGTTT-AACGTTATCGATGGTATCTGAAGATTCC 567659 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || |||| || |||||||| |||||||| Sbjct 567658 ACCTCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCAT 567609 >seq16 Length=823159 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || ||| ||||| |||||||| || || Sbjct 229142 ACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 229201 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||||||||| |||||||||||||| || || ||| | || Sbjct 229202 CAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGG 229261 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || || || || | ||| | ||||| || || | Sbjct 229262 GATCCCCTCCTTATCCTGAATCTTTTGCTT-GACGTTGTCGATTGTGTCTGAGGACTCAA 229320 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || |||||||| || | |||||| |||||||||||||| Sbjct 229321 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCAT 229369 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || ||| ||||| |||||||| || || Sbjct 228686 ACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 228745 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||||||||| |||||||||||||| || || ||| | || Sbjct 228746 CAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGG 228805 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || || || || | ||| | ||||| || || | Sbjct 228806 GATCCCCTCCTTATCCTGAATCTTTTGCTT-GACGTTGTCGATTGTGTCTGAGGACTCAA 228864 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || | |||||| |||||||| |||||| Sbjct 228865 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCATA 228914 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || ||| ||||| |||||||| || || Sbjct 228914 ACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 228973 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||||||||| |||||||||||||| || || ||| | || Sbjct 228974 CAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGG 229033 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || || || || | ||| | ||||| || || | Sbjct 229034 GATCCCCTCCTTATCCTGAATCTTTTGCTT-GACGTTGTCGATTGTGTCTGAGGACTCAA 229092 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || | |||||| |||||||| |||||| Sbjct 229093 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCATA 229142 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || || ||| ||||| |||||||| || || Sbjct 228459 CCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228518 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | ||||||||| |||||||||||||| || || ||| | || Sbjct 228519 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 228578 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || || || || | ||| | ||||| || || || Sbjct 228579 ATCCCCTCCTTATCCTGAATCTTTTGCTT-GACGTTGTCGATTGTGTCTGAGGACTCAAC 228637 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || |||||||| || | |||||| |||||||| |||||| Sbjct 228638 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCATA 228686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703711562240