Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq16 118 1e-21 seq56 111 1e-19 >seq16 Length=823159 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | ||| ||||||||| |||||||| || | | Sbjct 229143 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 229202 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || || || || || ||||| ||||| || || ||||| | || Sbjct 229203 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 229262 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| ||||||||||| | |||| | | ||||| || || || Sbjct 229263 ATCCCCTCCTTATCCTGAATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAAC 229321 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||| | || || |||||||| |||| ||||| ||||| ||||||||| Sbjct 229322 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCATT 229370 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 |||||||||||| | | | ||||| || | ||| ||||||||| |||||||| || Sbjct 228455 ATTTCCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTC 228514 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | |||||| || | || || || || || || ||||| ||||| || || ||||| | Sbjct 228515 AGACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGG 228574 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATT 35684 || | | |||||| ||| ||||||||||| | |||| | | ||||| || | Sbjct 228575 TGGGATCCCCTCCTTATCCTGAATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACT 228633 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| | || || |||||||| |||| ||||| ||||| || ||||| Sbjct 228634 CAACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | ||| ||||||||| |||||||| || | | Sbjct 228687 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228746 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || || || || || ||||| ||||| || || ||||| | || Sbjct 228747 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 228806 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| ||||||||||| | |||| | | ||||| || || || Sbjct 228807 ATCCCCTCCTTATCCTGAATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAAC 228865 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | || || |||||||| |||| ||||| ||||| || ||||| Sbjct 228866 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | ||| ||||||||| |||||||| || | | Sbjct 228915 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228974 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || || || || || ||||| ||||| || || ||||| | || Sbjct 228975 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 229034 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| ||||||||||| | |||| | | ||||| || || || Sbjct 229035 ATCCCCTCCTTATCCTGAATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAAC 229093 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | || || |||||||| |||| ||||| ||||| || ||||| Sbjct 229094 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 >seq56 Length=671324 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| |||| |||||| || | || || || |||||||| ||||| Sbjct 567799 TCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTACCGGCAAAA 567740 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || ||||| || | |||| | ||||| ||| ||||||||| || | | Sbjct 567739 ATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTTTGTTTAACGTTA 567680 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || ||||||||||| | ||||| || || || || | || || ||| Sbjct 567679 TCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTACA 567620 Query 35726 AATATCTGCATTCT 35739 || ||||||||||| Sbjct 567619 AAAATCTGCATTCT 567606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793194285760