Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq16 140 3e-28 seq56 136 4e-27 seq33 82.4 8e-11 >seq16 Length=823159 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 ||||| || | || || | || | ||| || || || |||||||| ||||||||||| Sbjct 228456 TTTCCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCA 228515 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | ||| |||| | || || || ||||| || |||||||||||||| || || || || Sbjct 228516 GACAA-GGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGG 228574 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || || || || || ||||| ||||| ||||| ||| | |||||| || || || Sbjct 228575 TGGGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTC 228634 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| || | |||||||| || |||||||| Sbjct 228635 AACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || |||||||| ||||||||||| | ||| |||| | || || || || Sbjct 228711 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAA-GGTGCGGCCATCCTCAAGTTG 228769 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||||||||| || || || || || || || || || || ||||| || Sbjct 228770 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 228829 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| ||||| ||| | |||||| || || || || || || ||||| |||||||| || Sbjct 228830 TTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAGT 228889 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| || |||||||| Sbjct 228890 CAGCGTTTTAACAAAGATTTGCAT 228913 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || |||||||| ||||||||||| | ||| |||| | || || || || Sbjct 228939 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAA-GGTGCGGCCATCCTCAAGTTG 228997 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||||||||| || || || || || || || || || || ||||| || Sbjct 228998 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 229057 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| ||||| ||| | |||||| || || || || || || ||||| |||||||| || Sbjct 229058 TTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAGT 229117 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| || |||||||| Sbjct 229118 CAGCGTTTTAACAAAGATTTGCAT 229141 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || |||||||| ||||||||||| | ||| |||| | || || || || Sbjct 229167 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAA-GGTGCGGCCATCCTCAAGTTG 229225 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||||||||| || || || || || || || || || || ||||| || Sbjct 229226 TTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 229285 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| ||||| ||| | |||||| || || || || || || ||||| |||||||| || Sbjct 229286 TTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTACCAGT 229345 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 | ||||| || || || |||||||| Sbjct 229346 CAGCGTTTTGACAAAGATCTGCATTTT 229372 >seq56 Length=671324 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || |||||||||||||| |||||||||||| Sbjct 567835 CCACCACGGAGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 567776 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || || || || |||||||||||||| |||||||| || || Sbjct 567775 AAGGTACGGCCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGA 567716 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || |||||||| || || | || || || |||||||| Sbjct 567715 ATTCCTTCCTTATCCTGGATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACC 567656 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || |||| || || || ||||| |||||| Sbjct 567655 TCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCATT 567608 >seq33 Length=522307 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || ||||||||||||||||||||||| || || | || ||| Sbjct 111565 ACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGTCCATCTTCG 111506 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct 111505 AGTTGTTTTCCTGCAAAGATCAAACGTTGCTGATCTGGTGGAATTCCT 111458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397945141440