Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq16 114 1e-20 >seq16 Length=823159 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| | ||||| || ||||| || |||||||| || | |||| | || || Sbjct 228704 TACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTC 228763 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| || || |||| | ||| ||||| || || || | ||||| ||||| Sbjct 228764 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTG 228823 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| | || | | | || | ||||||| || ||||| || || || || | ||| Sbjct 228824 AATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 228883 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| ||||| ||||||||||||||| Sbjct 228884 ACCAGTCAGCGTTTTAACAAAGATTTGCATA 228914 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| | ||||| || ||||| || |||||||| || | |||| | || || Sbjct 228932 TACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTC 228991 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| || || |||| | ||| ||||| || || || | ||||| ||||| Sbjct 228992 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTG 229051 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| | || | | | || | ||||||| || ||||| || || || || | ||| Sbjct 229052 AATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 229111 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| ||||| ||||||||||||||| Sbjct 229112 ACCAGTCAGCGTTTTAACAAAGATTTGCATA 229142 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||| || || || | || | |||||| || | ||||| || ||||| || |||||||| Sbjct 228455 ATTTCCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTC 228514 Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136 || | |||| | || || || ||||| || || |||| | ||| ||||| || || Sbjct 228515 AGACAAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGG 228574 Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196 || | ||||| ||||| ||||| | || | | | || | ||||||| || || Sbjct 228575 TGGGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTC 228634 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || || | ||| || ||||| ||||| ||||||||||||||| Sbjct 228635 AACCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCATA 228686 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316 ||| ||| ||| || ||| |||||||||||||||| ||||||| | |||||||||| Sbjct 376794 TCTGGTAGTCGGAAACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGT 376853 Query 108317 TCATAAAATGAAAGGGATTAGGTGTGTAATAGTATTTGGAGTATTTGAGATTAGTGAGCA 108376 |||||| | ||| ||||| | | || |||| ||||||| || ||| |||||| Sbjct 376854 CCATAAAGTCAAATGGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCA 376913 Query 108377 ACCAATCGGCCACAAACTCTATATAACTGCACATCAAGTGC-GAATTCATGCCCAACAGC 108435 | |||||| |||||||| || || ||||||| ||||| ||||| || | |||| Sbjct 376914 GTCTATCGGCAACAAACTCAATGTATTGGCACATC-AGTGCACTGTTCATTCCGATCAGC 376972 Query 108436 GCCACGGGTATTGCGTTAGTGAAAAAGtttttttCAAT 108473 | || || | | | || || || |||| |||||| Sbjct 376973 GATACTGGCAACGACTCTGTCAAGAACTTTTGTTCAAT 377010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934027120064