Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7 161 1e-34 seq16 113 6e-20 >seq7 Length=1083452 Score = 161 bits (178), Expect = 1e-34 Identities = 522/803 (65%), Gaps = 18/803 (2%) Strand=Plus/Minus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || || || |||||||||| || || || | ||| || || |||||||| | | Sbjct 949208 GGCAGTGCAATTGACGCCAAGTTGCAAACCGCCACCTCGTCGTTTGACGTGTACTCGACA 949149 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || || ||||| || || ||||| || || |||| ||||| || |||||||| Sbjct 949148 ATCTCTGTACACAAATTGGAGCTCTTGATTGTACCCAGGTTCTGCTGGTTTGACTTGCCA 949089 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || |||||||| ||||| |||||||| || || || || || | || || | ||||| Sbjct 949088 TTGCACGCATCTTTGTACAGCATGTACGGTGTTCCTGTTTCAATCTGCGAGTCCAGAATC 949029 Query 118884 GCCTTCCAGACATCGGCAG--CTGGCACAGTGGCGTTGGCTCGCCCCTCT---TCCTCGT 118938 || | ||| || | || | |||| || | | || |||||||| | ||||| Sbjct 949028 GCGTACCA--CAGCTGCTGTGCTGGAACCTTCTTTCTTGCCAGCCCCTCTGTGTTCTCGT 948971 Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 |||||||||| | || |||||||| || ||| |||| || ||| |||| | Sbjct 948970 ACTTTGTGTACAATGCCTCAAACTCCTCTCCCCAAACCTCGTGTAGATTTGGCGCCTCGT 948911 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 ||||||||| | | ||| | | | ||| ||||||||||| || | || || | Sbjct 948910 GTGGGCAGAACAAACTCCAGTCCCTATTGTCCAGCACCCGCTTCATAAACAAATCCGGAA 948851 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACG 119116 |||| | | | || | || || || |||| || | || || || || Sbjct 948850 TCCACATTCCATAAAACAAGTCACG--TGCCCTGTTCTCCTCCTTTCCGTGGTTCTTGCG 948793 Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 119176 ||| |||||| || | ||| ||||||||||| || |||||||| | ||| | || ||| Sbjct 948792 CAAACTCAAAAACTCAAAGATGTCCGCGTGCCATGGCTCCAGGTATATCGCAAATGCCCC 948733 Query 119177 ---CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 | | | || | |||| |||||||| || || ||| ||||| || ||||| Sbjct 948732 TGGCCTCTTATTTCCTCCTTGGTCCACATACCTTGCTGTATGGTTGAATACTCGGAGCAT 948673 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGTCCC--CCGAATACGAGACTTATTGGCTCTG 119291 ||| | || |||| ||| || || || || | |||||| || | || ||| Sbjct 948672 TGGCACTATCCCATTCGATGTCCCGTTCGTTCCTGCTATGTACGAGTCT--GTTGCCCTG 948615 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | | || | || |||||| || ||||| ||||||| || ||| || | | | Sbjct 948614 ATGTTATGCACACTCAGACCAATTCCTCCTGCTGACTTTGATATCATCGCACATTGCTTC 948555 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || | |||| ||||| || || |||||| ||| | | | | ||||| |||| Sbjct 948554 AGTGTATCGTAAATCCCTTCAATAGAGTCATCCTGCATCGTCAGCAAAAAGCACGACGAC 948495 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | || || | | |||||| | ||| || || ||||||| || || | |||| Sbjct 948494 AACTGCGGACGCGTTGTACCCGAGTTAAACAGCGTTGGTGAGGCATGCGTAAACAGCTTC 948435 Query 119472 TGGGACATCTTGTCGTAGGTCTC 119494 || |||||| ||| || ||||| Sbjct 948434 TGCGACATCATGTTATACGTCTC 948412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 117830 CTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCAT 117889 ||| | ||| ||||||||||| || ||||||||||||| ||||||| |||| | |||||| Sbjct 950133 CTTGGTTCGCAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGCCATAGAAATGCAT 950074 Query 117890 TGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATC 117949 | | || | | ||||| | |||||| || ||| | || ||||| || Sbjct 950073 GCTTGTGAGTTTCTGGTAGTTTGGATTGTCCATGTGGATGTTTAGCGACTGCGATTGGTC 950014 Query 117950 GATG-AAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACA 118008 ||| ||||| ||||| || || | | ||||| ||| |||| |||||| || ||| Sbjct 950013 AATGTAAGCG-CCCCGGTCAGCTGATAGGTCAATGACAATCTTCTGCTTGATCTCGTACA 949955 Query 118009 CAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATC 118045 |||| |||| || | ||| | ||| ||| || || Sbjct 949954 CAGTTTTGTACAGCTCCTTCAGGTCAGATGGAATTTC 949918 >seq16 Length=823159 Score = 113 bits (124), Expect = 6e-20 Identities = 476/739 (64%), Gaps = 16/739 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCCA 129785 ||||| ||| || || ||||| ||||| ||||| || | || ||| || | |||| Sbjct 376799 TAGTCGGAAACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCAT--TGAAATCATGTCCA 376856 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 |||| |||||||| |||| ||||| | | | | ||| | | |||| || | Sbjct 376857 TAAAGTCAAATGGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTC 376916 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTA 129904 ||| | || |||||||||| | ||||| | |||||| ||||| || | || Sbjct 376917 TATCGGCAACAAACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATA 376976 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 | ||| | || || | |||| | |||||| | ||||| || |||| ||| | Sbjct 376977 C-TGGCAACGACTCTGTCAAGAACTTTTGTTCAATGACAACAGCCTCAAGCACAATGCCC 377035 Query 129965 -TGAA--TGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 130021 ||| ||| ||| | ||| | |||| | | |||| || |||||| Sbjct 377036 CTGACCTTGGCCTCAGA---AGGCTTGTTGCTGAGATGGCTGAATAGCAGACAGGCAAAG 377092 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | || || || ||| | || || ||||| ||||| || |||||||| Sbjct 377093 TCTGTGTGTAACCCTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATC 377152 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || | ||| || | ||||||||| || ||| || || || ||||| || ||||| Sbjct 377153 AGCCCTCTCTTTTTGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCA 377212 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTT 130200 || || ||||| | ||||||| |||| | | | | | || ||||| |||||| Sbjct 377213 ACTACTGCAAACGCCGCCAAACGCTCACCAAATG-GTGCCTCATCGTCATCAATCCACTT 377271 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 || ||||||| ||||||| | || ||||| | | | | || || | ||| || | Sbjct 377272 CAGGGCCCACTTTGCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTG 377331 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATG 130320 ||||| |||| ||||| ||||| | || | || ||| || |||||| || Sbjct 377332 GTTCTTCTCTGCCTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTG 377391 Query 130321 GACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380 | | ||| | | || || | |||||| | | || || ||||||||||| Sbjct 377392 AATGTTCTCAATCATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTC 377451 Query 130381 ATCTGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 130439 || ||| ||| ||| | | || ||| ||||||||||| || ||||||| || | Sbjct 377452 AT-TGCTAAAGTTGCTCACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATG 377510 Query 130440 CCAGGATATACTTTATGAA 130458 | ||||| | ||| || || Sbjct 377511 CTAGGATGTTCTTGATAAA 377529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434643408320