Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 152 6e-32 seq16 127 2e-24 >seq7 Length=1083452 Score = 152 bits (168), Expect = 6e-32 Identities = 560/867 (65%), Gaps = 20/867 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||||||| || | ||| | || | | || || |||||||| || || || || || Sbjct 948349 CCACAGTACTTGATTATGAGAGTTAGCGTTGGGATCCATGGGGACGATATAGAGTCGGTT 948408 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| || ||| |||||| || |||| | || || ||||||| || || Sbjct 948409 ATTGAGACGTATAACATGATGTCGCAGAAGCTGTTTACGCATGCCTCACCAACGCTGTTT 948468 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || | |||||| | | || || |||| ||||| | | | | |||| ||| Sbjct 948469 AACTCGGGTACAACGCGTCCGCAGTTGTCGTCGTGCTTTTTGCTGACGATGCAGGATGAC 948528 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | || || || | || || | | | |||||| || ||||||| || || Sbjct 948529 TCTATTGAAGGGATTTACGATACACTGAAGCAATGTGCGATGATATCAAAGTCAGCAGGA 948588 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG--GGGACAA 104519 || ||||| || | ||| | | || || || | | |||||| | || || | Sbjct 948589 GGAATTGGTCTGAGTGTGCATAACATCAGGGC-AACAGA-CTCGTACATAGCAGGAACGA 948646 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || ||| |||| || | |||||||| || ||||| ||| ||||| | |||| Sbjct 948647 ACGGGACATCGAATGGGATAGTGCCAATGCTCCGAGTATTCAACCATACAGCAAGGTATG 948706 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | |||| || | | | | || || | || | || || |||||||||| Sbjct 948707 TGGACCAAGGAGGAAATAAGAGGCCAGGGGCATTT---GCGATATACCTGGAGCCATGGC 948763 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTT-GCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||||| ||| | ||||| ||||||| ||| ||||| || | |||||| || Sbjct 948764 ACGCGGACATCTTTGAGTTT-TTGAGTTTGCGCAAGAACCACGGAAAGGAGGAGAACAGG 948822 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || | || | | | |||||||| ||| | || |||||| | || ||| Sbjct 948823 GCACGTGACTTGTTTTATGGAATGTGGATTCCGGATTTGTTTATGAAGCGGGTGCTGGAC 948882 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | | | | ||| | | || || ||| || |||| || ||| ||| | ||| Sbjct 948883 AATAGGGACTGGAGTTTGTTCTGCCCACACGAGGCGCCAAATCTACACGAGGTTTGGGGA 948942 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGA---AGAAGGTCGGGCGACTGCGACG 104869 ||||||||||| || | ||||||||||||||| | ||| || | ||| | || | Sbjct 948943 GAGGAGTTTGAGGCATTGTACACAAAGTACGAGAACACAGAGGGGCTGGCAAGAAAGAAG 949002 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 || ||||| | ||||| | || ||||| | || || | || || || ||||| Sbjct 949003 GTTCCAGCACAGCAGCTGTGGTACGCGATTCTGGACTCGCAGATTGAAACAGGAACACCG 949062 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 |||||||| |||||||| || || || ||| || || |||| ||||| ||| Sbjct 949063 TACATGCTGTACAAAGATGCGTGCAATGGCAAGTCAAACCAGCAGAACCTGGGTACAATC 949122 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA-GATGAGACGGCTGT 105048 ||||| |||||| | |||||||| || | || | || | |||| || ||| ||| || Sbjct 949123 AAGAGCTCCAATTTGTGTACAGAGATTGTCGAGTACAC-GTCAAACGACGAGGTGGCGGT 949181 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCC 105075 || ||| | || ||||| || || || Sbjct 949182 TTGCAACTTGGCGTCAATTGCACTGCC 949208 >seq16 Length=823159 Score = 127 bits (140), Expect = 2e-24 Identities = 299/438 (68%), Gaps = 10/438 (2%) Strand=Plus/Minus Query 94523 ACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACT 94582 ||||||| ||||||||||||| || ||||||||||| ||| || | | ||||| Sbjct 377519 ACATCCTAGCATTCTTTGCTGCCTCGGATGGAATTGTCAATGAAAACCTGGTGAGCAACT 377460 Query 94583 TTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAAT 94641 || ||||||| || || | | || || |||| ||||||| || || |||| || Sbjct 377459 TTAGCAATGAGGTACAGATTC-CAGAGGCAAGATGTTTCTATGGGTTCCAAA-TCATGAT 377402 Query 94642 -GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 94700 || | | || | || | ||| || | |||| || ||| | |||| || Sbjct 377401 TGAGAACATTCACAGCGAAATGTACTCACTGCTGCTGGACACATACATTCAAGATGAGGC 377342 Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCA-AACAGTTCCGTGTATTCAAAAGAAAGCGG 94759 |||||||| || || ||| | || || | |||| ||||||| ||| | | || || Sbjct 377341 AGAGAAGAACCACCTGTTTAACGCAATTGACAACA-TTCCGTGCATTGGAGAAAAGGCAA 377283 Query 94760 ATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 94818 | ||||| |||||||| ||||| || | | || | |||| |||||| | || Sbjct 377282 AGTGGGCCCTGAAGTGGATTGATGACGATGAGGCAC-CATTTGGTGAGCGTTTGGCGGCG 377224 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAA 94877 ||||| ||||||||||| ||||| || || || || ||| || |||| |||||||| Sbjct 377223 TTTGCAGTAGTTGAGGGTATTTTCTTTTCAGGATCGTT-TGCAGCAATTTTCTGGCTCAA 377165 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||| || |||||||| || |||||||| |||||||| | || || || || Sbjct 377164 AAAGAGAGGGCTGATGCCAGGACTTACATTCTCCAATGAGCTTATTTGCCGCGATGAAGG 377105 Query 94938 ACTCCACCAAGAGTTTGC 94955 | ||| ||| ||||| Sbjct 377104 GTTACACACAGACTTTGC 377087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260275065280