Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 seq16 95.1 1e-14 >seq7 Length=1083452 Score = 118 bits (130), Expect = 1e-21 Identities = 510/793 (64%), Gaps = 25/793 (3%) Strand=Plus/Plus Query 20040 TCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGC 20099 |||| ||| ||||| ||||| | | ||| |||| || || || ||| | ||||||| Sbjct 949346 TCATTGATGTGAACTACTACCCAATCAAGGAGGCGGAAAACTCAAACATGAGACACCGGC 949405 Query 20100 CGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCG 20159 | || | ||| || || || || |||||||||| || ||||||| | || | || | Sbjct 949406 CAATTGGGATGGGGGTTCAAGGGCTGGCCGACGCGTTTTTGATGCTGAGGCTGCCGTTTG 949465 Query 20160 ACGATCCCAAGGCGCGC--GAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGC 20217 | || | || || |||||||||||| || |||||| || |||||||||| || Sbjct 949466 AG--TCTGAGGGGGCCAAGGAGCTCAACAAGCTGATTTTCGAGACCCTGTACCACGCAGC 949523 Query 20218 CCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTC 20277 || | ||||||||||| || | || |||| || ||| ||| | | |||| Sbjct 949524 TCTTGAAGTGTCGTGCGAACTGGCAATGAAGAACGGACCCTACTCGACATACGAGGGCAG 949583 Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGA-ATGAG---T 20333 || | | | || | || ||| ||| ||||||| || |||| | | | | Sbjct 949584 TCCAATGAGCAAAGGAAAACTACAGATGGATCTGTGGGGAGT---TGAGCCAAGCGACCT 949640 Query 20334 TTTGGA----GC-GCCCTCAAGGTTGAGAT--CAAGACCCACGGGCTTCGCAACTCGTTG 20386 | ||| || | || | | |||| ||| || | || | | |||||| || Sbjct 949641 GTGGGACTGGGCAGAGCTGAGGCAAAAGATAGCAAAAC--ATGGAGTCAGAAACTCGCTG 949698 Query 20387 CTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAG-GCTTT 20445 || | ||||| ||||| || || || || | ||||| ||||| |||||||| ||||| Sbjct 949699 CTGCTGGCGCCAATGCCTACAGCGTCAACATCGCAGATTCTGGGGTACAACGAGTGCTTT 949758 Query 20446 CGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGT 20505 ||||| ||||| | ||||| ||| | | || || ||||||||| | || Sbjct 949759 -GAGCCATACACCTCAAACATTTACACAAGAAGAGTTCTTGCAGGTGAGTTCCAGGTAGT 949817 Query 20506 AAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAA 20565 ||| | ||| | | ||| | | ||| | |||||||| | | || | Sbjct 949818 CAACCCGTGGCTGCTGAGAGACCTTGTGGAGAGAAAGTTGTGGTCGGACGACATGCGCCA 949877 Query 20566 TGAAATTGTCCGAGCCGGCGGGAGCGTCCAGG-CATTG--GATATCCCCCAGAACCTCAA 20622 | || | | | |||| || ||| ||| || || || |||| || Sbjct 949878 GGCCATAATTGCACACAACGGGTCTGTACAGTACATCAACGAAATTCCATCTGACCTGAA 949937 Query 20623 GGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGA 20682 ||| | |||| || || | || ||| ||||||| |||| ||| | | || || Sbjct 949938 GGAGCTGTACAAAACTGTGTACGAGATCAAGCAGAAGATTGTCATTGACCTATCAGCTGA 949997 Query 20683 TCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCT 20742 || ||||| ||||| ||||| || |||||||| || || |||||| ||||| | | Sbjct 949998 CCGGGGCGCTTACATTGACCAATCGCAGTCGCTAAACATCCACATGGACAATCCAAACTA 950057 Query 20743 GGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTA 20802 ||| || | ||||||| | || |||||| | |||||||||||||| |||||||| Sbjct 950058 CCAGAAACTCACAAGCATGCATTTCTATGGCTGGAAGAAGGGGCTCAAGACCGGCATGTA 950117 Query 20803 CTATCTGCGGACC 20815 ||| ||||| ||| Sbjct 950118 CTACCTGCGAACC 950130 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 ||||||| ||||||||||| |||||||| ||||||||||| || || | ||||| || Sbjct 950129 GTTCGCAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGCCATAGAAATGCATGCTT 950070 Query 78250 GACAGCTT-GGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | || || | || | || || |||||| |||||| |||||||| || ||||| || Sbjct 950069 GTGAGTTTCTGGTAG-TTTGGATTGTCCATGTGGATGTTTAGCGACTGCGATTGGTCAAT 950011 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTC 78359 ||| || || ||||| || | | ||| ||||| ||| ||| ||||| Sbjct 950010 GTAAGCGCCCCGGTCAGCTGATAGGTCAATGACAATCTTCTGCTTGATCTC 949960 >seq16 Length=823159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 286/437 (65%), Gaps = 5/437 (1%) Strand=Plus/Minus Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 |||||| | || ||||||| |||| || ||||| || || ||||||||||| | Sbjct 377540 ACGAGCGTTACTTTATCAAGAACATCCTAGCATTCTTTGCTGCCTCGGATGGAATTGTCA 377481 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 ||||| | | | |||||| ||| || || |||||| | ||||| | | |||| Sbjct 377480 ATGAAAACCTGGTGAGCAACTTTAGCAATGAGGTACAGATTCCAGAGGCAAGATGTTTCT 377421 Query 59800 ACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATA 59859 | | || || | | ||| || ||| ||| | |||||| || || | || | Sbjct 377420 ATGGGTTCCAAATCATGATTGAGAACATTCACAGCGAAATGTACTCACTGCTGCTGGACA 377361 Query 59860 AGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCCC 59918 | | | ||| || ||||||| ||||| || || || | | | || Sbjct 377360 CATACATTCAAGATGAGGCAGAGAAGAACCACCTGTTTAACGCAATTGACAACATTCCGT 377301 Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCC--TGGAGCATCATTT 59975 ||| || | |||| ||| | |||||| || ||||||| || | || ||| ||||| Sbjct 377300 GCA-TTGGAGAAAAGGCAAAGTGGGCCCTGAAGTGGATTGATGACGATGAGGCACCATTT 377242 Query 59976 GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 | | ||| | || |||||| || || || || ||||| || || ||||| Sbjct 377241 GGTGAGCGTTTGGCGGCGTTTGCAGTAGTTGAGGGTATTTTCTTTTCAGGATCGTTTGCA 377182 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || |||||||||||||||||| | || || ||||| || || | |||||||| ||||| Sbjct 377181 GCAATTTTCTGGCTCAAAAAGAGAGGGCTGATGCCAGGACTTACATTCTCCAATGAGCTT 377122 Query 60096 ATTTCCCGGGACGAGGG 60112 |||| ||| || || || Sbjct 377121 ATTTGCCGCGATGAAGG 377105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524306327680