Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12 190 2e-43 seq16 82.4 8e-11 >seq12 Length=1112767 Score = 190 bits (210), Expect = 2e-43 Identities = 316/446 (71%), Gaps = 14/446 (3%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || |||||||| |||||||||||||| | ||| |||||||| ||| ||| Sbjct 186535 ATCCAGTTCCAATGCCCTCAGCACCGTTGACCAGCACCATAGGCACAATGGGGATGTACC 186476 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || |||||||| | | |||||| ||| ||||| || | | || ||||| || | Sbjct 186475 ACATGGGCTCCACAAGCTTACCGTCGTCCTCAACGTACTTGAGCAGAGAGTTGTC-GCTG 186417 Query 151994 G-ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | || ||| || || |||| |||||| ||||||||||| || | | ||| Sbjct 186416 GCATTGAAGATATTGCGTGTCAGCTTGCTCAAAGTGGTGAAGATGTAACGTGCGGAGGCA 186357 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| || || || ||||| ||||||||||| || ||||| || | ||||||| Sbjct 186356 GCATCTTTTCCGCCCTGCAGCCTAGTTCCAAACTGGCCTCTTGGCTCAAGCACGTTGAGG 186297 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTG---CA--GACTCG 152167 |||||| ||||||| | | ||| ||||| |||||| | ||| || |||| | Sbjct 186296 TTGTTGCTGCCCACGTAGTCCTGCGCCAA---CACAATTATCGACTGAGTCAAGGACT-G 186241 Query 152168 CTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGC-GCCACCTTC 152226 | ||||||||||| ||||| || || |||| | ||| |||||| | ||| |||||||| Sbjct 186240 C-TCACCGTGGTGGTACGCGGTTTGTTCCGACACGTACCCCGCC-AGTGCAGCCACCTTG 186183 Query 152227 ATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTC 152286 || || || | ||||| ||||| || |||| || | ||||||||| || || Sbjct 186182 ATTTCGCTCTTGAGGTTTCGCTTGAAGCACCCGTAGATGATTTTGCGCTGGCCCGGCTTG 186123 Query 152287 AAACCGTCCACCACGTGAGGAATCGA 152312 || || |||||||| |||||||| Sbjct 186122 AATCCATCCACCACAGATGGAATCGA 186097 Score = 147 bits (162), Expect = 2e-30 Identities = 293/428 (68%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 |||||||| || ||||| ||||| || | ||| | ||| ||||| | || | ||| || Sbjct 186533 CCAGTTCCAATGCCCTCAGCACCGTTGACCAGCACCATAGGCACAATGGGGATGTACCAC 186474 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 |||||||| || |||||||||| ||||||||||||| | ||||| || | | Sbjct 186473 ATGGGCTCCACAAGCTTACCGTCGTCCTCAACGTACTTGAGCAGAGAGTTGTCGCTGGCA 186414 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCT--AGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 | ||| || || || || |||| | | | ||||| |||||||| | | |||| Sbjct 186413 TTGAAGATATTGCGTGT-CAGCTTGCTCAAAGTG-GTGAAGATGTAACGTGCGGAGGCAG 186356 Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389 |||| || || || || | || || || || || || ||||| | | ||| |||| Sbjct 186355 CATCTTTTCCGCCCTGCAGCCTAGTTCCAAACTGGCCTCTTGGCTCAAGCACGTTGAGGT 186296 Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTG-GAGGCTCGCCTCA 117448 ||||| |||||| ||| || ||||| | |||| || | | | | |||| Sbjct 186295 TGTTGCTGCCCACGTAGTCCTGCGCCAACACAATTATCG-ACTGAGTCAAGGACTGCTCA 186237 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCT 117508 || ||||| ||||| || || |||| |||||| |||||||| ||||||||| || || Sbjct 186236 CCGTGGTGGTACGCGGTTTGTTCCGACACGTACCCCGCCAGTGCAGCCACCTTGATTTCG 186177 Query 117509 GACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCA 117568 | | ||||| ||||| ||| | || || | |||||||| | ||||| | ||| Sbjct 186176 CTCTTGAGGTTTCGCTTGAAGCACCCGTAGATGATTTTGCGCTGGCCCGGCTTGAATCCA 186117 Query 117569 TCCGCCAC 117576 ||| |||| Sbjct 186116 TCCACCAC 186109 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 152914 TTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGA 152973 || || |||||||| || || |||||||| ||||| || ||||||| || || ||| Sbjct 185507 TTCTCCGTCACCTGCTTGTTTGTCGCATCCCGCACATTCAGCAGCTTTCCTCGCAGCGGA 185448 Query 152974 AACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCC 153033 ||||| ||| || | || || || || |||| || | ||| ||||| | |||||| Sbjct 185447 AACACCCCGTACAGATCCCGCCCCACCACACTCATTCCCGAAATTGCAAGCGTTTTCGCT 185388 Query 153034 GAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTG 153093 || || ||||| || | ||| | ||||| || | || | | || || |||| ||| Sbjct 185387 GAATCTCCCTCCGTCAGAATCAATGTACAATCCTTTGAACTCTTTGTCCCCGCCCTGTTT 185328 Query 153094 GCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTTCTTC 153153 ||||| || ||||| |||||||||||| |||| ||| | || || || |||||| Sbjct 185327 GCGTCCTCCAGCTTCACTATTCCCGTGATCTTGCTCGCCTTGGTTCCATCCGTCTTCTTC 185268 Query 153154 A 153154 | Sbjct 185267 A 185267 Score = 89.7 bits (98), Expect = 6e-13 Identities = 249/378 (66%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 ||||||||||| || | ||||||| ||| ||| | ||| | ||| ||| | |||||| Sbjct 185642 AGCCCCTTGATGTGCGCCCCGTCCACGTCCTGATCCGCCATCACCATTAGGTGTCCGTAC 185583 Query 118073 CGTAAATCTCTCAGGGAG-TTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAG 118131 | ||| || || | | || || | | || || | || || || |||| || | Sbjct 185582 CTCAAA-CTGTCCGTGCTCTTGTACTCTTGCCCGTGCTTCAGTCCCAGAATCTGCTTGAT 185524 Query 118132 GTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGG 118191 || | | || || ||||||||||| || | || || ||||| || || || | Sbjct 185523 GTAGTTGATCTCGCTGTTCTCCGTCACCTGCTTGTTTGTCGCATCCCGCACATTCAGCAG 185464 Query 118192 CTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAAT 118251 ||| || ||||| |||||||| || || || || ||||| || |||| || | ||| Sbjct 185463 CTTTCCTCGCAGCGGAAACACCCCGTACAGATCCCGCCCCACCACACTCATTCCCGAAAT 185404 Query 118252 AGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGATG 118311 ||||| | ||||| || || ||||| || | ||| | || || || | | | Sbjct 185403 TGCAAGCGTTTTCGCTGAATCTCCCTCCGTCAGAATCAATGTACAATCCTTTGAACTCTT 185344 Query 118312 AGTACCGGCCCAATTAGCATCATCCAGCTTCGGAACGCCCGTAA---TGCGCGACTTTTT 118368 || || |||| || || || ||||||||| | ||||| | ||| || | || Sbjct 185343 TGTCCCCGCCCTGTTTGCGTCCTCCAGCTTCACTATTCCCGTGATCTTGCTCGCC---TT 185287 Query 118369 GGACCCATCTGTCTTCTT 118386 || ||||| |||||||| Sbjct 185286 GGTTCCATCCGTCTTCTT 185269 >seq16 Length=823159 Score = 82.4 bits (90), Expect = 8e-11 Identities = 167/248 (67%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 75072 TGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCG 75131 ||| || | |||||| | | ||||||| ||||||||| || || ||| || | | Sbjct 377411 TGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTTGCTCACC 377470 Query 75132 ATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAG 75191 | || || |||| || || |||||||| || || || || || | | ||||||||| Sbjct 377471 AGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCTTGATAAAG 377530 Query 75192 TGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCC 75251 | ||||| | || | || || ||||| | | ||| | | ||| | |||| Sbjct 377531 TAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGATCCACCTCC 377590 Query 75252 TCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTG 75311 || | |||||||| | | |||||||||||||| | ||||| ||| |||| ||| Sbjct 377591 TCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCATGGTACTTG 377650 Query 75312 ATTGGAAA 75319 ||||| || Sbjct 377651 ATTGGGAA 377658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215507505600