Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16 163 3e-35 seq56 159 4e-34 seq7 111 2e-19 seq12 109 6e-19 seq33 100 3e-16 >seq16 Length=823159 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||| ||||| || || || || ||||| |||||||||||||| Sbjct 229370 AATGCAGATCTTTGTCAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTC 229311 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | ||| || |||||||| |||||||| || || |||||||| Sbjct 229310 AGACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 229251 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | ||||||||||| || ||||| ||||||| || ||| | | ||||| || Sbjct 229250 ACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAA 229191 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || |||||| | || | |||||||| ||||| Sbjct 229190 CATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGTCTTCGTGGTGG 229143 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || ||||| || || || || ||||| |||||||||||||| Sbjct 228913 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228854 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || |||||||| |||||||| || || |||||||| Sbjct 228853 GACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAA 228794 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||||||||| || ||||| ||||||| || ||| | | ||||| || Sbjct 228793 CAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAAC 228734 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || |||||| | || | |||||||| ||||| Sbjct 228733 ATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGTCTTCGTGGTGG 228687 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || ||||| || || || || ||||| |||||||||||||| Sbjct 229141 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 229082 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || |||||||| |||||||| || || |||||||| Sbjct 229081 GACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAA 229022 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||||||||| || ||||| ||||||| || ||| | | ||||| || Sbjct 229021 CAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAAC 228962 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || |||||| | || | |||||||| ||||| Sbjct 228961 ATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGTCTTCGTGGTGG 228915 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || ||||| || || || || ||||| |||||||||||||| Sbjct 228685 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228626 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || |||||||| |||||||| || || |||||||| Sbjct 228625 GACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAA 228566 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||||||||| || ||||| ||||||| || ||| | | ||||| || Sbjct 228565 CAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAAC 228506 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| || || || || | || | |||||||| |||||| Sbjct 228505 ATCCAAAAGGAGTCTACCCTGCACTTGGTACTTCGTCTTCGTGGTGGA 228458 Score = 116 bits (128), Expect = 4e-21 Identities = 392/608 (64%), Gaps = 3/608 (0%) Strand=Plus/Minus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356 |||||||| | ||||| ||| ||||| | | ||||| || || || ||||||| Sbjct 377658 TTCCCAATCAAGTACCATGAGGTGTGGAATATGTACAAAAAGGCGGAAGCGTCTTTCTGG 377599 Query 64357 ACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG 64416 | | |||||||| |||||| | | || | |||||||||| || ||| Sbjct 377598 AACGCTGAGGAGGTGGATCTCTCACATGACAAAATACACTGGGAAAAGCTTTCAGAACAC 377539 Query 64417 GAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTT 64476 || | |||| |||||| ||||||||||||| || | || |||||||| | Sbjct 377538 GAGCGTTACTTTATCAAGAACATCCTAGCATTCTTTGCTGCCTCGGATGGAATTGTCAAT 377479 Query 64477 GAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTAT 64536 || || ||| || |||| || || || ||||| |||||||| | | |||||| Sbjct 377478 GAAAACCTGGTGAGCAACTTTAGCAATGAGGTACAGATTCCAGAGGCAAGATGTTTCTAT 377419 Query 64537 GCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAG 64596 | || || | | || | ||||| |||| | ||| || || || | |||| Sbjct 377418 GGGTTCCAAATCATGATTGAGAACATTCACAGCGAAATGTACTCACTGCTGCTGGACACA 377359 Query 64597 TTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCT 64656 | ||| ||| | |||||| | ||||| | || || || | | || Sbjct 377358 TACATTCAAGATGAGGCAGAGAAGAACCACCTGTTTAACGCAATTGACAACATTCCGTGC 377299 Query 64657 GTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CG-TGGGTCGTCGTTTGGT 64713 || ||||||| | |||||| | |||||| || || || | | | |||||| Sbjct 377298 ATTGGAGAAAAGGCAAAGTGGGCCCTGAAGTGGATTGATGACGATGAGGCACCATTTGGT 377239 Query 64714 CAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCT 64773 ||||| | || || ||||| || || || ||||||||||| || || || | Sbjct 377238 GAGCGTTTGGCGGCGTTTGCAGTAGTTGAGGGTATTTTCTTTTCAGGATCGTTTGCAGCA 377179 Query 64774 ATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 ||||||||||| |||||| | || ||||||||||| || | || || || ||||| || Sbjct 377178 ATTTTCTGGCTCAAAAAGAGAGGGCTGATGCCAGGACTTACATTCTCCAATGAGCTTATT 377119 Query 64834 TCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGAC 64893 | || || || ||| | ||| ||| ||||| | || |||||||| |||| || Sbjct 377118 TGCCGCGATGAAGGGTTACACACAGACTTTGCCTGTCTGCTATTCAGCCATCTCAGCAAC 377059 Query 64894 AAACCATC 64901 || || || Sbjct 377058 AAGCCTTC 377051 >seq56 Length=671324 Score = 159 bits (176), Expect = 4e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| || ||||| ||||| || || || ||||| || || || ||||| || || Sbjct 567605 TAGAATGCAGATTTTTGTAAAGACACTAACTGGGAAGACCATCACCCTCGAGGTGGAATC 567664 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 |||| ||| | || | || || || ||||| ||||| |||||||| ||||| Sbjct 567665 TTCAGATACCATCGATAACGTTAAACAAAAGATCCAGGATAAGGAAGGAATTCCCCCAGA 567724 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| ||| | |||||||| ||||||||||| ||||||| |||||| | | ||||| Sbjct 567725 TCAGCAACGTTTGATTTTTGCCGGTAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTA 567784 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||||||||||||||||| | || | ||||| || ||||| Sbjct 567785 CAACATCCAAAAGGAATCCACTCTTCACTTGGTACTCCGTCTCCGTGGTGG 567835 >seq7 Length=1083452 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 ||||||| ||||| || |||||||| || || ||||||| || || || ||| Sbjct 949196 GACGCCAAGTTGCAAACCGCCACCTCGTCGTTTGACGTGTACTCGACAATCTCTGTACAC 949137 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 ||||| || ||| |||||||||||||| | ||||||||||||| | ||||| || || Sbjct 949136 AAATTGGAGCTCTTGATTGTACCCAGGTTCTGCTGGTTTGACTTGCCATTGCACGCATCT 949077 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 ||||| ||||||||| || || || || | ||| || | || || |||| ||| Sbjct 949076 TTGTACAGCATGTACGGTGTTCCTGTTTCAATCTGCGAGTCCAGAATCGCGTACCA 949021 >seq12 Length=1112767 Score = 109 bits (120), Expect = 6e-19 Identities = 235/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 31195 ATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAG 31254 || |||||||| |||||| || ||||| ||| |||| || || | | || | || Sbjct 185299 ATCACGGGAATAGTGAAGCTGGAGGACGCAAACAGGGCGGGGACAAAGAGTTCAAAGGAT 185358 Query 31255 TGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGT 31314 || || | ||| | || ||||| || || || || ||||||| ||| | || ||||| Sbjct 185359 TGTACATTGATTCTGACGGAGGGAGATTCAGCGAAAACGCTTGCAATTTCGGGAATGAGT 185418 Query 31315 GTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGT 31374 || |||||||| || || ||||||||||||||| ||||| |||| || || || || Sbjct 185419 GTGGTGGGGCGGGATCTGTACGGGGTGTTTCCGCTGCGAGGAAAGCTGCTGAATGTGCGG 185478 Query 31375 GACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTC 31434 || || | || ||||| ||||| || ||| | | || | || |||| || Sbjct 185479 GATGCGACAAACAAGCAGGTGACGGAGAACAGCGAGATCAACTACATCAAGCAGATTCTG 185538 Query 31435 GGGCTTCAGCA-TGGCAAG-GTATATAATTCACTGAGAGAATTGCGGTACGGTCGCCTCA 31492 || || |||| |||||| ||| | | ||| || || ||| ||||||| | ||| | Sbjct 185539 GGACTGAAGCACGGGCAAGAGTACA-AGAGCACGGACAG-TTTGAGGTACGGACACCTAA 185596 Query 31493 TGATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 || | ||| | || || | ||||| ||||||||||| || Sbjct 185597 TGGTGATGGCGGATCAGGACGTGGACGGGGCGCACATCAAGGGGCT 185642 >seq33 Length=522307 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||| ||||| ||||| ||| | || ||||| || || |||||||| |||| ||| Sbjct 111459 GGAATTCCACCAGATCAGCAACGTTTGATCTTTGCAGGAAAACAACTCGAAGATGGACGT 111518 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | ||||| || | ||||||||||| || || ||||| || | |||||||| Sbjct 111519 ACTCTTTCTGACTACAACATTCAAAAGGAATCAACCCTCCATCTTGTTCTCCGTCTTCGT 111578 Query 27628 GGTGG 27632 ||||| Sbjct 111579 GGTGG 111583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309886720640