Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq16 131 1e-25 seq56 118 7e-22 >seq16 Length=823159 Score = 131 bits (144), Expect = 1e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || ||||||||| ||||| || || || Sbjct 229143 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 229202 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||||||||| || ||||| || ||||| |||||||| || || Sbjct 229203 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 229262 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||||||| || ||| | ||||||||| | ||| || Sbjct 229263 ATCCCCTCCTTATCCTGAATCTTTTG-CTTGACGTTGTCGATTGTGTCTGAGGACTCAAC 229321 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || | ||| || |||||||| || | |||||| ||||| |||||||| || || Sbjct 229322 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCATTTTTAT 229375 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || ||||||||| ||||| || || || Sbjct 228687 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228746 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||||||||| || ||||| || ||||| |||||||| || || Sbjct 228747 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 228806 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||||||| || ||| | ||||||||| | ||| || Sbjct 228807 ATCCCCTCCTTATCCTGAATCTTTTG-CTTGACGTTGTCGATTGTGTCTGAGGACTCAAC 228865 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| || | |||||| ||||| || ||||| Sbjct 228866 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || ||||||||| ||||| || || || Sbjct 228915 CCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228974 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||||||||| || ||||| || ||||| |||||||| || || Sbjct 228975 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 229034 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||||||| || ||| | ||||||||| | ||| || Sbjct 229035 ATCCCCTCCTTATCCTGAATCTTTTG-CTTGACGTTGTCGATTGTGTCTGAGGACTCAAC 229093 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| || | |||||| ||||| || ||||| Sbjct 229094 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || ||||||||| ||||| || || || Sbjct 228459 CCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228518 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||||||||| || ||||| || ||||| |||||||| || || Sbjct 228519 AAGGTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGG 228578 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||||||| || ||| | ||||||||| | ||| || Sbjct 228579 ATCCCCTCCTTATCCTGAATCTTTTG-CTTGACGTTGTCGATTGTGTCTGAGGACTCAAC 228637 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| || | |||||| ||||| || ||||| Sbjct 228638 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 >seq56 Length=671324 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| |||||||| ||||| || || || | || || Sbjct 567826 AGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGG 567767 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| ||||||||||| || ||||| || || || || || | ||| ||| Sbjct 567766 CCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCC 567707 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||||||||| ||||||| || || || ||| ||||| || | ||| Sbjct 567706 TTATCCTGGATCTTTTG-TTTAACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGT 567648 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || |||| || || |||||||||||||| Sbjct 567647 GATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCAT 567609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729323824776