Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq16 104 2e-17 seq56 96.9 2e-15 >seq16 Length=823159 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| ||| ||||| |||| || || | | Sbjct 228685 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228626 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| ||||| || || || || || | || | Sbjct 228625 GAC-----ACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAG 228571 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||||||| ||||||||| | || || | |||| |||||| || | Sbjct 228570 ACCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACT 228511 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || |||| ||||| | ||| | ||||| || Sbjct 228510 ACAACATCCAAAAGGAGTCTACCCTGCACTTGGTACTTCGTCTTCGTGGTGG 228459 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| ||| ||||| |||| || || | | Sbjct 228913 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228854 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| ||||| || || || || || | || | Sbjct 228853 GAC-----ACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAG 228799 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||||||| ||||||||| | || || | |||| |||||| || | Sbjct 228798 ACCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACT 228739 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || | |||||||| | ||| | ||||| || Sbjct 228738 ACAACATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGTCTTCGTGGTGG 228687 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| ||| ||||| |||| || || | | Sbjct 229141 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 229082 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| ||||| || || || || || | || | Sbjct 229081 GAC-----ACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAG 229027 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||||||| ||||||||| | || || | |||| |||||| || | Sbjct 229026 ACCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACT 228967 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || | |||||||| | ||| | ||||| || Sbjct 228966 ACAACATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGTCTTCGTGGTGG 228915 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||| ||||| || ||||| ||| ||||| |||| || || | Sbjct 229372 AAAATGCAGATCTTTGTCAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCC 229313 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | ||| ||||||| ||||| ||||| || || || || || | || Sbjct 229312 TCAGAC-----ACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCAC 229258 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || || ||||| || |||||||| ||||||||| | || || | |||| |||||| | Sbjct 229257 CAGACCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTG 229198 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||||||||| ||| || | |||||||| | ||| | ||||| || Sbjct 229197 ACTACAACATCCAAAAGGAGTCTACCCTTCATTTGGTACTTCGTCTTCGTGGTGG 229143 >seq56 Length=671324 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 || |||||| |||||||| || || || |||||||| || || | || || ||| Sbjct 567605 TAGAATGCAGATTTTTGTAAAGACACTAACTGGGAAGACCATCACCCTCGAGGTGGAATC 567664 Query 27846 CACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900 | || ||| |||| || |||||||| || || || ||||| |||| Sbjct 567665 TTCAGA-----TACCATCGATAACGTTAAACAAAAGATCCAGGATAAGGAAGGAATTCCC 567719 Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960 || |||||||| || ||||||||||| || ||| | || || | || | ||||||| Sbjct 567720 CCAGATCAGCAACGTTTGATTTTTGCCGGTAAGCAACTTGAGGATGGCCGTACCTTGTCC 567779 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||||||||| || |||| | || ||||| | ||| | ||||| || Sbjct 567780 GACTACAACATCCAAAAGGAATCCACTCTTCACTTGGTACTCCGTCTCCGTGGTGG 567835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862087730744