Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq56 178 3e-39 seq16 140 8e-28 seq33 96.9 8e-15 >seq56 Length=671324 Score = 178 bits (196), Expect = 3e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||||||||| || ||||||||||| || || | | ||| | ||||| Sbjct 567820 AGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 567761 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || || || | ||||| || || || |||| ||||||||| ||| Sbjct 567760 TCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCC 567701 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||||||||| ||||| |||||||| || || ||| |||||||| ||||| ||| Sbjct 567700 TGGATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTC 567641 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || || || || ||||||||||| | ||||||| || Sbjct 567640 TTCCCAGTTAGTGTCTTTACAAAAATCTGCATTCTA 567605 >seq16 Length=823159 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || ||||| ||||||||||| || || | | ||| Sbjct 229148 ACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGT 229207 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || || || || || || | ||||||||||| || || | || Sbjct 229208 GCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCC 229267 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| |||||||| || ||||| ||||| ||||| ||| |||||||| || Sbjct 229268 CTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAG 229327 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || || || || ||||| | ||||||||| Sbjct 229328 GGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCATTTT 229372 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || || ||||| ||||||||||| || || | | ||| Sbjct 228464 ACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGT 228523 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || || || || || || | ||||||||||| || || | || Sbjct 228524 GCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCC 228583 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| |||||||| || ||||| ||||| ||||| ||| |||||||| || Sbjct 228584 CTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAG 228643 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || || ||||| | ||||| Sbjct 228644 GGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || ||||| ||||||||||| || || | | ||| Sbjct 228692 ACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGT 228751 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || || || || || || | ||||||||||| || || | || Sbjct 228752 GCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCC 228811 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| |||||||| || ||||| ||||| ||||| ||| |||||||| || Sbjct 228812 CTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAG 228871 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || || ||||| | ||||| Sbjct 228872 GGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || ||||| ||||||||||| || || | | ||| Sbjct 228920 ACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGT 228979 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || || || || || || | ||||||||||| || || | || Sbjct 228980 GCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCC 229039 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| |||||||| || ||||| ||||| ||||| ||| |||||||| || Sbjct 229040 CTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAG 229099 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || || ||||| | ||||| Sbjct 229100 GGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 >seq33 Length=522307 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| || ||||||||||| || || || || ||||| || ||| |||||||| Sbjct 111271 CCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTATCTGAGGACTCAACCTCA 111212 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || ||||| || |||||||| || |||||||| || | ||||||| || Sbjct 111211 AGGGTGATGGTTTTTCCCGTAAGGGTCTTTACGAAGATCTGCATTCTA 111164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150930682280