Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq16 91.5 1e-13 >seq16 Length=823159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 |||||||| || || ||| ||||| || || || || | |||| || || | || || Sbjct 228705 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGGCCATCCTC 228763 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| ||||| || ||||| || | ||| || ||||| |||||| | | ||| || ||| Sbjct 228764 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCC-CTCCTTATCCT 228822 Query 39194 TGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || || |||| ||| | | | || || ||||| || || | || || || Sbjct 228823 GAATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTT 228881 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||||||||||||||||||||||||| Sbjct 228882 TTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 |||||||| || || ||| ||||| || || || || | |||| || || | || || Sbjct 228933 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGGCCATCCTC 228991 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| ||||| || ||||| || | ||| || ||||| |||||| | | ||| || ||| Sbjct 228992 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCC-CTCCTTATCCT 229050 Query 39194 TGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || || |||| ||| | | | || || ||||| || || | || || || Sbjct 229051 GAATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTT 229109 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||||||||||||||||||||||||| Sbjct 229110 TTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| ||||| || || || || | |||| || || | || || Sbjct 228477 ACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGGCCATCCTC 228535 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| ||||| || ||||| || | ||| || ||||| |||||| | | ||| || ||| Sbjct 228536 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCC-CTCCTTATCCT 228594 Query 39194 TGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || || |||| ||| | | | || || ||||| || || | || || || Sbjct 228595 GAATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTT 228653 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||||||||||||||||||||||||| Sbjct 228654 TTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 |||||||| || || ||| ||||| || || || || | |||| || || | || || Sbjct 229161 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGGCCATCCTC 229219 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| ||||| || ||||| || | ||| || ||||| |||||| | | ||| || ||| Sbjct 229220 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCC-CTCCTTATCCT 229278 Query 39194 TGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || || |||| ||| | | | || || ||||| || || | || || || Sbjct 229279 GAATCTTTTGCTTGA-CGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTT 229337 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || ||||||||||| |||||||| ||||| |||| Sbjct 229338 TTACCAGTCAGCGTTTTGACAAAGATCTGCATTTTTA 229374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545223073736