Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq16 196 7e-45 >seq16 Length=823159 Score = 196 bits (216), Expect = 7e-45 Identities = 578/881 (66%), Gaps = 19/881 (2%) Strand=Plus/Plus Query 46354 ACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAAC 46413 |||||||| |||||||| || || ||||||| || ||| || | |||||||| ||||| Sbjct 376808 ACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAAT 376867 Query 46414 GGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACG 46473 ||||| || || ||| ||||| | || | ||||||||| ||||| Sbjct 376868 GGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAACA 376927 Query 46474 AATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCC 46533 || || || || ||||| | ||| |||||||| || || || || | | | Sbjct 376928 AACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGAC 376987 Query 46534 TCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGT--TT 46591 || || | |||| ||||||||| |||| || || | | | ||| ||| || Sbjct 376988 TCTGTCAAGAACTTTTGTTCAAT---GACAACAGCCTCAAGCA-CAATGCCCCTGACCTT 377043 Query 46592 --CCTCACTTGG-TGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAA 46648 ||||| || | | ||| | | ||| | || | | ||| ||||| || || | Sbjct 377044 GGCCTCAGAAGGCTTGTTGC-TGAGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTA 377102 Query 46649 GGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCT 46708 |||||||| | | ||| | || || || ||||| || || ||||| || || | || Sbjct 377103 ACCCTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCT 377162 Query 46709 TTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGA 46768 |||||||||| || || || || || ||||| |||||||| || || || || | || | Sbjct 377163 TTTTGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAA 377222 Query 46769 ATGCGACAAGTCTCTCTCCGTAACTGG-----CATCATTATGAATCCACCTTTGAGCCCA 46823 | || | | | ||| || || ||| |||| | || ||||||| | | ||||| Sbjct 377223 ACGCCGCCAAACGCTCACC--AAATGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCA 377280 Query 46824 ATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttC 46883 | ||||||| | || || || | || || || ||||| || ||| || || Sbjct 377281 CTTTGCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTC 377340 Query 46884 ATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTC 46943 | ||||| || ||||| || | | || |||||||| |||||||| || Sbjct 377341 TGCCTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTC 377400 Query 46944 AATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTAC-AAA 47002 ||| || || || || || ||||||||||| || | |||||||||||| | | ||| Sbjct 377401 AATCATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAA 377460 Query 47003 ATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACAT 47062 | | ||| || || ||||| || |||||||| |||||||| ||||| | | | Sbjct 377461 GTTGCTCA-CCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGT 377519 Query 47063 GTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122 || ||||| || || | | || || | ||||| | | || | ||| | Sbjct 377520 TCTTGATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGA 377579 Query 47123 TATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATAT 47182 ||| || || ||||| ||||||| ||||| || || ||||| ||||||||||| | | Sbjct 377580 GATCCACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCT 377639 Query 47183 CACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 || | || | ||| || || | |||||||| |||| ||| Sbjct 377640 CATGGTACTTGATTGGGAACAGCACAAATCTGCTTGGGTTT 377680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933758359040