Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq16 118 2e-21 seq56 100 7e-16 >seq16 Length=823159 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| |||||||| |||||||||||||| || | || || | ||||| Sbjct 229158 AGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCC 229217 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | || ||||| | | ||| || ||||| || Sbjct 229218 TCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCC 229277 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| ||||| | || | ||||||| ||| || ||||| ||||| ||| Sbjct 229278 TGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTT 229337 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || |||| ||||||||| Sbjct 229338 TTACCAGTCAGCGTTTTGACAAAGATCTGCATTTT 229372 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| |||||||| |||||||||||||| || | || || | ||||| Sbjct 228702 AGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCC 228761 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | || ||||| | | ||| || ||||| || Sbjct 228762 TCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCC 228821 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| ||||| | || | ||||||| ||| || ||||| ||||| ||| Sbjct 228822 TGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTT 228881 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || |||| ||||| Sbjct 228882 TTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| |||||||| |||||||||||||| || | || || | ||||| Sbjct 228930 AGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCC 228989 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | || ||||| | | ||| || ||||| || Sbjct 228990 TCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCC 229049 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| ||||| | || | ||||||| ||| || ||||| ||||| ||| Sbjct 229050 TGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTT 229109 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || |||| ||||| Sbjct 229110 TTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| |||||||||||||| || | || || | ||||| || | Sbjct 228479 CAAG-TGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCAA 228537 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || || || | | || ||||| | | ||| || ||||| || |||| Sbjct 228538 GTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGAA 228597 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| ||||| | || | ||||||| ||| || ||||| ||||| ||||| | Sbjct 228598 TCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTAC 228657 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || |||| ||||| Sbjct 228658 CAGTCAGCGTTTTAACAAAGATTTGCAT 228685 >seq56 Length=671324 Score = 100 bits (110), Expect = 7e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||| || || |||||||||||||| |||| || || | Sbjct 567827 GAGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACG 567768 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| || || | | ||||| || | | |||||||| Sbjct 567767 GCCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTC 567708 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || |||||||| || | || | | | |||||| || || || || || Sbjct 567707 CTTATCCTGGATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGT 567648 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || || || || || || ||||| || || | ||||||| || Sbjct 567647 GATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCATTCTA 567605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819735600312