Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq56 187 5e-42 seq16 183 6e-41 seq33 102 2e-16 >seq56 Length=671324 Score = 187 bits (206), Expect = 5e-42 Identities = 181/230 (79%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || || ||||||| || | ||| ||| ||||||||||||||||| | Sbjct 567836 ACCACCACGGAGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 567777 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| ||||| || |||||||| ||||||||||| || || | Sbjct 567776 CAAG-GTACGGCCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGG 567718 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || ||||| || ||||||||| ||| ||| ||||||| || || |||| ||| | Sbjct 567717 GAATTCCTTCCTTATCCTGGATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCA 567658 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| ||||| || || | ||||| || || ||||||||| Sbjct 567657 CCTCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCATT 567608 >seq16 Length=823159 Score = 183 bits (202), Expect = 6e-41 Identities = 185/238 (78%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || |||||||||| ||| | || || ||||||||||||||||||| Sbjct 229142 ACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 229201 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||||||||| |||||||| || ||||| ||||||||||||||||| | Sbjct 229202 CAAG-GTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 229260 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || |||||||| || || |||||| || ||| | ||||| ||||| || | || | Sbjct 229261 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAA 229320 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108 | || || || || || ||||| |||| || || || || ||||||||||| || || Sbjct 229321 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTGACAAAGATCTGCATTTTTATCTA 229378 Score = 176 bits (194), Expect = 9e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || |||||||||| ||| | || || ||||||||||||||||||| Sbjct 228686 ACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 228745 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||||||||| |||||||| || ||||| ||||||||||||||||| | Sbjct 228746 CAAG-GTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 228804 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || |||||||| || || |||||| || ||| | ||||| ||||| || | || | Sbjct 228805 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAA 228864 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || || ||||| |||| || ||||| || || ||||| Sbjct 228865 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 176 bits (194), Expect = 9e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || |||||||||| ||| | || || ||||||||||||||||||| Sbjct 228914 ACCACCACGAAGACGAAGTACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 228973 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||||||||| |||||||| || ||||| ||||||||||||||||| | Sbjct 228974 CAAG-GTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTG 229032 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || |||||||| || || |||||| || ||| | ||||| ||||| || | || | Sbjct 229033 GGATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAA 229092 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || || ||||| |||| || ||||| || || ||||| Sbjct 229093 CCTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||| || |||||||||| || | || || ||||||||||||||||||| | Sbjct 228459 CCACCACGAAGACGAAGTACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 228518 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| |||||||| || ||||| ||||||||||||||||| || Sbjct 228519 AAG-GTGCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGG 228577 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || |||||| || ||| | ||||| ||||| || | || || Sbjct 228578 GATCCCCTCCTTATCCTGAATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAAC 228637 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || ||||| |||| || ||||| || || ||||| Sbjct 228638 CTCAAGGGTAATTGTTTTACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 >seq33 Length=522307 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | || ||| ||||| ||||||||||||| Sbjct 111584 ACCACCACGAAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCAGA 111525 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||| || || ||||| || |||||||| || ||||||||||||||||| || || Sbjct 111524 AAGAGTACGTCCATCTTCGAGTTGTTTTCCTGCAAAGATCAAACGTTGCTGATC 111471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738234383088