Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq56 127 1e-24 seq16 102 6e-17 >seq56 Length=671324 Score = 127 bits (140), Expect = 1e-24 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| |||||| ||| ||||||||||||||||| |||| | || | || | || || Sbjct 567817 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGC-CATCCTC 567759 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| |||||||| |||||||| |||||||||| || | |||||||| ||| Sbjct 567758 AAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTG 567699 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || || || ||| | ||||| || | ||||||||||| | || || |||| Sbjct 567698 GATCTTTTGTTT-AACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCT 567640 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| || || || ||||| Sbjct 567639 TCCCAGTTAGTGTCTTTACAAAAATCTGCAT 567609 >seq16 Length=823159 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 |||| ||| || || |||||||||||||||||| || | | || | ||| | || || Sbjct 228477 ACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGT-GCGGCCATCCTC 228535 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || ||||| |||||||| || || |||| || | || ||||| ||| Sbjct 228536 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTG 228595 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | | || ||||| | ||| || ||||| | ||||| || || Sbjct 228596 AATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 228655 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || ||||||||||| Sbjct 228656 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 |||| ||||| || |||||||||||||||||| || | | || | ||| | || || Sbjct 228705 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGT-GCGGCCATCCTC 228763 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || ||||| |||||||| || || |||| || | || ||||| ||| Sbjct 228764 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTG 228823 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | | || ||||| | ||| || ||||| | ||||| || || Sbjct 228824 AATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 228883 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || ||||||||||| Sbjct 228884 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 |||| ||||| || |||||||||||||||||| || | | || | ||| | || || Sbjct 228933 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGT-GCGGCCATCCTC 228991 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || ||||| |||||||| || || |||| || | || ||||| ||| Sbjct 228992 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTG 229051 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | | || ||||| | ||| || ||||| | ||||| || || Sbjct 229052 AATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 229111 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || ||||||||||| Sbjct 229112 ACCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 |||| ||||| || |||||||||||||||||| || | | || | ||| | || || Sbjct 229161 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGT-GCGGCCATCCTC 229219 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || ||||| |||||||| || || |||| || | || ||||| ||| Sbjct 229220 AAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTG 229279 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | | || ||||| | ||| || ||||| | ||||| || || Sbjct 229280 AATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTT 229339 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || ||||| ||||| Sbjct 229340 ACCAGTCAGCGTTTTGACAAAGATCTGCAT 229369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990084108424