Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq56 154 4e-32 seq16 149 2e-30 seq33 102 2e-16 >seq56 Length=671324 Score = 154 bits (170), Expect = 4e-32 Identities = 160/206 (78%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || |||||||||||||||||| ||||| Sbjct 567612 CAGATTTTTGTAAAGACACTAACTGGGAAGACCATCACCCTCGAGGTGGAATCTTCAGAT 567671 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||||||||||| ||||| || |||||||| || || || |||||| Sbjct 567672 ACCATCGATAACGTTAAACAAAAGATCCAGGATAAGGAAGGAATTCCCCCAGATCAGCAA 567731 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || ||||| || || || || ||||| | || |||| |||| || ||| | Sbjct 567732 CGTTTGATTTTTGCCGGTAAGCAACTTGAGGATGGCCGTAC-CTTGTCCGACTACAACAT 567790 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 |||||| ||||| || || || |||| Sbjct 567791 CCAAAAGGAATCCACTCTTCA-CTTG 567815 >seq16 Length=823159 Score = 149 bits (164), Expect = 2e-30 Identities = 159/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || || ||||| || ||||| ||||| || ||||||| Sbjct 228682 CAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCAGAC 228623 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || ||||| || ||||| ||| Sbjct 228622 ACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAACAA 228563 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || |||||||| || || ||||| | || |||| | || || ||| | Sbjct 228562 CGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCAC-CTTGTCTGACTACAACAT 228504 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 |||||| || || || ||||| |||| Sbjct 228503 CCAAAAGGAGTCTACCCTGCA-CTTG 228479 Score = 145 bits (160), Expect = 2e-29 Identities = 155/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || || ||||| || ||||| ||||| || ||||||| Sbjct 228910 CAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCAGAC 228851 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || ||||| || ||||| ||| Sbjct 228850 ACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAACAA 228791 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || |||||||| || || ||||| | || |||| | || || ||| | Sbjct 228790 CGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCAC-CTTGTCTGACTACAACAT 228732 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||| || || || || ||| Sbjct 228731 CCAAAAGGAGTCTACCCTTCAT 228710 Score = 145 bits (160), Expect = 2e-29 Identities = 155/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || || ||||| || ||||| ||||| || ||||||| Sbjct 229138 CAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCAGAC 229079 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || ||||| || ||||| ||| Sbjct 229078 ACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAACAA 229019 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || |||||||| || || ||||| | || |||| | || || ||| | Sbjct 229018 CGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCAC-CTTGTCTGACTACAACAT 228960 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||| || || || || ||| Sbjct 228959 CCAAAAGGAGTCTACCCTTCAT 228938 Score = 141 bits (156), Expect = 2e-28 Identities = 160/211 (76%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || ||||| || || || ||||| || ||||| ||||| || Sbjct 229372 AAAATGC---AGATCTTTGTCAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAG 229316 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||||| ||||| |||||||| |||||||||||||| || || || ||||| || Sbjct 229315 TCCTCAGACACAATCGACAACGTCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCA 229256 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 ||||| ||||| | || || || |||||||| || || ||||| | || |||| | || Sbjct 229255 GACCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCAC-CTTGTCTGA 229197 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| ||||||| || || || || ||| Sbjct 229196 CTACAACATCCAAAAGGAGTCTACCCTTCAT 229166 >seq33 Length=522307 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||| || || || |||||||| | ||||| || |||||||| |||||||||||| | Sbjct 111458 AGGAATTCCACCAGATCAGCAACGTTTGATCTTTGCAGGAAAACAACTCGAAGATGGACG 111517 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||||| | || || ||| | ||||| |||||||| || ||||||||| Sbjct 111518 TACTCTTTCTGACTACAACATTCAAAAGGAATCAACCCTCCATCTTGTT 111566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730089557968