Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq56 96.9 3e-15 >seq56 Length=671324 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | |||| || || ||| ||||| || ||||| ||||| Sbjct 567839 ACCACCACCACGGAGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTC 567780 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| | ||| || | || || || ||||| ||||| || |||| || || || || | Sbjct 567779 GGACAAGGTACGGCCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGG 567720 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||||| | ||||| ||| ||| ||||| || |||| | | || || || | Sbjct 567719 GGGAATTCCTTCCTTATCCTGGATCTTTTGTTT-AACGTTATCGATGGTATCTGAAGATT 567661 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| | || || || || || || || |||||||| ||||||||||| Sbjct 567660 CCACCTCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCAT 567609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303583926400