Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2381 141 2e-28 seq2204 141 2e-28 seq2444 138 2e-27 seq137 136 8e-27 seq2120 123 5e-23 >seq2381 Length=15399 Score = 141 bits (156), Expect = 2e-28 Identities = 186/255 (73%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 |||||| || || |||| | ||| | || ||| | ||| ||| | || |||| Sbjct 10854 ATCATTGTTGAGGCTGTTGGTATTGAACAAGAATTCTTGACTGATGCTTTACC-TGTCAA 10796 Query 230446 CTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 ||| ||||| ||||||||| | |||||| | || ||||| |||||||| ||||| || | Sbjct 10795 CTTGATTGGTATGAACGCTAAGCTTATGTGCCAATACATTGAATTCGTCGCCGATCGTTT 10736 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | ||||| ||||| | || || | ||||| | | |||||||||| || ||||| Sbjct 10735 GATGGTTGCCCTTGGCTTTGATAAGATCTACAATGCCACTAACCCCTTTGATTTCATGGA 10676 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 | ||||| |||||||| |||||||||||||| || |||||||| |||||| || | Sbjct 10675 CATGATTTCTCTTCAAGGCAAGACCAACTTCTTTGAGAAGCGTGTTTCTGACTACCAACG 10616 Query 230625 GCCTGGTGTGATGAA 230639 ||||||| ||||| Sbjct 10615 TGCTGGTGTCATGAA 10601 >seq2204 Length=21180 Score = 141 bits (156), Expect = 2e-28 Identities = 265/385 (69%), Gaps = 6/385 (2%) Strand=Plus/Plus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 |||||| || || |||||| |||| ||||| ||| |||| ||||||| |||| || Sbjct 6316 TCAAGCTTCTACTTCTGAATTGTACGGAAAGGTTGTCGAAACGCCTCAAAAGGAAACCAC 6375 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT--TTGT 61205 || || || |||||| || |||||||||||||| || || | || ||||| |||| Sbjct 6376 GCCTTTCTACCCTCGTTCACCCTATGGTGTTGCAAAGCTTTATGGCTATTGGATCGTTGT 6435 Query 61206 AAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAG 61265 |||||||| || || |||| |||| | ||| || ||| || ||||| || Sbjct 6436 --CAATTACCGTGAATCTTATGAGATGTATACATGCAATGGCATTCTCTTTAATCATGAA 6493 Query 61266 AGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATT 61325 ||| | | || | | ||||| || ||||| ||||| || || ||||| ||||| Sbjct 6494 TCTCCTCGTCGTGGCCGTACCTTTGTCACACGTAAGATTACAAATGCTGTTGCTGATATT 6553 Query 61326 -TTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGG 61384 || | ||| || |||| ||||| | || || || ||| | || | |||||||| Sbjct 6554 CATTTGGGACGTC-AAGAATGTTTGTATTTGGGCAATATTGACGCCAAGCGTGATTGGGG 6612 Query 61385 ATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGA 61444 |||| |||||||||||| | |||||| | ||| | |||||||| | || || || Sbjct 6613 TCATGCTCGAGATTATATCGAAGGAATGTGGCTTATGCTTCAACAAGAGAAGCCTGACGA 6672 Query 61445 CTACGTTATTGCGACTGGACAGACG 61469 || || | || || ||| | ||| Sbjct 6673 CTTTGTCTTAGCCACGGGAGAAACG 6697 >seq2444 Length=14139 Score = 138 bits (152), Expect = 2e-27 Identities = 259/381 (68%), Gaps = 0/381 (0%) Strand=Plus/Plus Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 319346 ||||| ||| ||||| ||||| | | ||||| |||||||||||||| ||||||||||| Sbjct 195 CTTCAAGATAGCACGTTCCTTGGTCTTAATACCTTCGAGGAACCCGGGTTCGGGGAACTT 254 Query 319347 CCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCAC 319406 | | | | | | | ||| | ||||||| || | ||| |||||| || Sbjct 255 GAAGGAGATTTGAGAAGCTTCAAGAGAGTAGTAAGAAGCAGCACGAGGAACCTTCTTGAC 314 Query 319407 GAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAAT 319466 ||| ||||| || || |||||||| ||| ||||| ||| |||||||| || || || Sbjct 315 GAATTCGGAAAGGTTACCCTTGTAACGCTTGAGCTTGTAGTTGGGTTCGTAGTGAATGAT 374 Query 319467 AGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTC 319526 || || || || | ||| || |||||||| || ||||| | | | | ||| Sbjct 375 GTCGGAACAGACGTGATCCAAGAAACCAGAGTCGTGRGAAACAATGATGGAGGTAACAGT 434 Query 319527 CTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGT 319586 |||||| | ||||| | |||||| |||||| ||| | ||||| || Sbjct 435 CTTAAGACCCAAGAGGTAGTTTTCCAACCAGGCAACGTTAACAACATCCAAGTGGTTAGT 494 Query 319587 CGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTT 319646 || |||||||| | || | | || |||| | ||| ||||| ||||||||||| || Sbjct 495 AGGTTCGTCAAGCAAGAGAATATCAGCATTCATCAACATAGCACGAGCAAGAGCGAGCTT 554 Query 319647 CATTTTCCACCCTCCGGAAAG 319667 ||| ||||| || || ||||| Sbjct 555 CATCTTCCAACCACCAGAAAG 575 >seq137 Length=45107 Score = 136 bits (150), Expect = 8e-27 Identities = 445/682 (65%), Gaps = 16/682 (2%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||||||||||| |||||||||||||| || |||| ||| || ||| || || || | Sbjct 41616 GTCTTCACCGGTTGCATAACGCCATTGAATGTACTCGTTAGGAGTCGAATCCAGGTGTTT 41675 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 || || |||||||| || ||||| || || || |||| ||||| || ||||||||||| Sbjct 41676 TTCAATATGGTGGAAGGCGTGCTGGGCTACATAGGCAATACGCAAGTTGGGATGCTTCCA 41735 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 ||| |||| | || ||| | | ||||| | || ||| || || || || || || Sbjct 41736 TACAGTACCCACTTCGGATTCAAGCTCGCCCGTCAACAGCTTTATCAGTGTACTCTTACC 41795 Query 319176 CGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCAT----TCA 319231 |||||||| || | ||| ||| | || || ||| || | || || | Sbjct 41796 GGCACCGTTGGGACCGATGACAGCGACACGAGATGCCAACGA-ACATTGGAATGAGATAT 41854 Query 319232 CGTTGTCAAAGATTAGTTTTT--CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT 319289 ||| ||| || || || | ||||| ||||| | ||| | ||| | ||| Sbjct 41855 CGT--TCA---GTTGCTTCTTGGCAGTACCAGGATATTGGAAATCAACATTCTTCATCTT 41909 Query 319290 CATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCA 319349 || ||| ||||| ||||| | |||| ||||| || | || || |||||||| | Sbjct 41910 CAGGATAGCACGTTCCTTGGTCTTGATGCCCTCAAGATAGCCAGGTTCGGGGAATCGAAA 41969 Query 319350 CGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTG-ATTCGGGACGCTTCTTCACGA 319408 |||| | | || | ||||| |||| | || || |||||| || | Sbjct 41970 GACAGTCTGAGCTGCTCCCAGTGAATAGTAGGCAGCTGCACGAGGCAC-CTTCTTGACAA 42028 Query 319409 ACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAG 319468 | || |||||||| || || ||||||||| |||| || |||||||||||| Sbjct 42029 ATTCCGACAGATTACCGCGATAACGCTTCAGCTTATAGTTACCCTCATAATGGATAATAT 42088 Query 319469 AGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCT 319528 || || ||| || | || || ||||||||||| ||||| | | | ||| || Sbjct 42089 CAGTACACACATGATCCAAAAATCCAGAGTCGTGTGAGACAATGATCGAAGTCACGGTCT 42148 Query 319529 TAAGGTTGATCAGGTA-TTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTC 319587 | || | ||| || ||| | | ||| ||| || |||| |||||||| || Sbjct 42149 TGAGACCCAACAGATAGTTCTCT-AGCCAGGCCACATTGACCACATCCAGATGGTTAGTA 42207 Query 319588 GGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTC 319647 || ||||| | || || | | || |||| | ||| ||||| || | || || ||| Sbjct 42208 GGTTCGTCCAACAGGAGAATATCGGCATTCATCAACATGGCACGAGCCAAGGCAAGCTTC 42267 Query 319648 ATTTTCCACCCTCCGGAAAGAG 319669 |||||||| || || || |||| Sbjct 42268 ATTTTCCAGCCACCCGAGAGAG 42289 Score = 111 bits (122), Expect = 3e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 318544 TCGCGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGA 318603 || || |||| |||| || ||||| ||||| || | || ||| |||| | ||| | | Sbjct 41158 TCACGATCAAGATAGTTAGTAGGTTCATCCAAGACAAGCATGTGTGGTTTGTTCCACATA 41217 Query 318604 GCAGCGCCAATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGA 318663 || || ||||||||||| || | |||||| || ||||| |||||||||||| |||||||| Sbjct 41218 GCTGCACCAATAACCAACTTGACCTTTTGACCACCAGAAAGACCACGAATGTGAGAATGA 41277 Query 318664 GTTGTAAATTCAGGGTCGAGCCCAACATTTGCCATATGTTCTTCCACGTTCTTTGCGGTC 318723 | | ||| || || || || ||||| | | | ||| | ||| | | |||||| ||| Sbjct 41278 GAAGCAAACTCGGGCTCAAGTCCAACTTCCTCTAGATGCTTTTCGATTTCCTTTGCCGTC 41337 Query 318724 A 318724 | Sbjct 41338 A 41338 >seq2120 Length=25072 Score = 123 bits (136), Expect = 5e-23 Identities = 238/346 (69%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || |||||||| || || || ||| |||| ||||||| |||| || Sbjct 11318 CAAGCTTCTACCTCTGAACTCTACGGTAAGGTTGTCGAAACCCCTCAAAAGGAAACCACA 11377 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTA-A 61207 || ||||| |||||| || ||||||||||| || || || | |||||||| ||||| Sbjct 11378 CCATTTTACCCTCGTTCTCCCTATGGTGTTGCCAAGCTCTATGGTTACTGGA-TTGTAGT 11436 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAG 61267 || ||||| || || |||| |||| || |||||| || ||||| ||||| Sbjct 11437 CAACTACCGTGAATCCTATGACATGTATGCCTGTAACGGTATCCTCTTCAACCACGAATC 11496 Query 61268 TCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTT 61327 ||| | | |||| | || || || ||||| ||||| || ||||| ||||| Sbjct 11497 TCCTCGTCGTGGTCGTACTTTCGTCACACGTAAGATTACTCGTGCTGTTGCTGATATTCA 11556 Query 61328 TAACGGT-GTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 61386 | ||| ||| || | || | || || || ||||| || | || | |||||||| Sbjct 11557 TTTGGGTCGTC-AAGACTGTCTCTACCTTGGTAACATTGATGCCAAGCGTGATTGGGGTC 11615 Query 61387 ATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432 |||| |||||| | || | ||||||| | ||| | |||||||| Sbjct 11616 ATGCCCGTGATTATGTTGAAGGTATGTGGCTCATGCTTCAACAAGA 11661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057785860816820