Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2381 168 7e-37 >seq2381 Length=15399 Score = 168 bits (186), Expect = 7e-37 Identities = 448/675 (66%), Gaps = 21/675 (3%) Strand=Plus/Plus Query 16649 TCTTGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTA 16708 ||||||| |||| |||| | |||||| || ||| || || || || ||||| Sbjct 10596 TCTTGTTCATGA----CACCAGCACGTTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTG 10651 Query 16709 GTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATA 16766 || ||||| | ||||| || | |||||||||||||| || ||||| || || | || Sbjct 10652 GTCTTGCCTTGAAGAGAAATCATGTCCATGAAATCAAAGGGGTTAGTGGCATTGTAGATC 10711 Query 16767 TTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACA 16826 || | | | || || | | || || | ||| || || ||||| || |||||||||| Sbjct 10712 TTATCAA--AGCCAAGGGCAACCATCAAACGATCGGCGACGAATTCAATGTATTGGCACA 10769 Query 16827 TTAA-TTCGCAGTTCATTCCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTG 16884 | | || || |||||| || || ||| | || || | ||| || ||||| ||| ||| Sbjct 10770 TAAGCTTAGC-GTTCATACCAATCAAGTTG-ACAGGTAAAGCATCAGTCAAGAATTCTTG 10827 Query 16885 CTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTT 16944 || ||| |||| || || ||| || || | ||||| | || || | | || Sbjct 10828 TTCAATACCAACAGCCTCAACAATGATGCTCTTGATACGTTCGGCAGAAGGAATCTTCTT 10887 Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004 || || | |||| ||||| || || || || | || || || | | |||||| Sbjct 10888 GAGGTGAGTGAACAAGAGACAAGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAG 10947 Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 ||||||||| || ||||| || ||||| || || ||||| | ||| || || | ||| Sbjct 10948 TTCGTTAGAGAAAGTCAAACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGC 11007 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124 || || ||||| ||||| ||||| ||||| | ||||| || | ||||| || || | Sbjct 11008 AAATGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAA 11067 Query 17125 CGTCGCGTCTTTGTTACGA---ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 | ||| ||||| | ||||| || |||| || || || |||| || || Sbjct 11068 ---AGAGTC---GTTACCAGAGATCCACTTGAATGCCCAATCTGCCTTACGCTTGATACA 11121 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGT 17241 || ||||| || || | ||| || |||| ||||| || || | || || || Sbjct 11122 GGGAATGGTTTCGATAGCATCAAACAACATCTCCTTTTCTTGATTATCTTTGATGTAGGT 11181 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 || || | | ||||| |||||| || |||||||| || || || || || || || Sbjct 11182 GTCAATCAACAAACTGTAGGTTTCGGCATGGATGTTCTCAATAGCAATTTGGAAACCATA 11241 Query 17302 AAAGCATCGGGCTTC 17316 || ||| |||||| Sbjct 11242 GAAACATTTGGCTTC 11256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517527395333520