Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2381 208 8e-49 >seq2381 Length=15399 Score = 208 bits (230), Expect = 8e-49 Identities = 565/854 (66%), Gaps = 22/854 (3%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 |||||| ||| ||| || || || |||||||| || || || | | ||| || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 15973 CATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA 16032 ||| ||||||||||| ||||| || | |||||| | || || | | || Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 16033 TCTATCTGCTACAAATTCTATATATTGACACATTAAG--TCGCAATTAATTCCTAT-AAG 16089 | ||| || || ||||| || ||||| ||||| ||| | || || || || || ||| Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACAT-AAGCTTAGCG-TTCATACCAATCAAG 10795 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 | | || || | ||| | || || |||| |||||| || |||| || || |||||| Sbjct 10796 TTG-ACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGAT 10854 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 || ||| |||| || | | || ||||| | |||| ||||| || || Sbjct 10855 GCTCTTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAA 10914 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 ||| || || ||||| || | | |||||||||||| || ||||| || || ||||| Sbjct 10915 GTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCAT 10974 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 || || ||||| | |||||| || | |||||||| || || ||||| ||||| || Sbjct 10975 GAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTC 11034 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTT 16389 |||| ||||| || | ||||| || || | || || ||| | ||||| || Sbjct 11035 GACAGCAGCAAAGGCAACCAATCGCTCAGCAAA---AGAGTCGTTACCAGAGATCCACTT 11091 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 | |||| || || || | || ||||| || ||||| || || | |||||| | Sbjct 11092 GAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACAT 11151 Query 16450 CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTG 16509 ||| ||||| ||| |||| | || || || ||||||| |||||||| |||| | || Sbjct 11152 CTCCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATG 11211 Query 16510 TATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 |||||||| || || || || || |||||||| ||| || || | || | |||||| Sbjct 11212 GATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTC 11271 Query 16570 CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA---GCAAAAAA 16626 | | || || ||| ||| ||||| || | ||| ||| ||| ||||| || Sbjct 11272 ATCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCA---GCACTGGCAAAGAA 11328 Query 16627 CGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG-----CCAATCT 16681 ||||| | | ||||| || ||||| | ||| | | || |||||| Sbjct 11329 GGCCAAGACACGAGAGATGAAGAATCGTTCGT-TGCTGT-TCATTTTGTTCTCCCAATCG 11386 Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741 | | || ||||| | || | |||||| | ||||||||| ||| | |||||||| Sbjct 11387 TGTTGGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTG 11446 Query 16742 TACATTTTCCAAAT 16755 || | || ||| || Sbjct 11447 TAGAATTGCCAGAT 11460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511396410998480