Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2193 224 7e-54 >seq2193 Length=22042 Score = 224 bits (248), Expect = 7e-54 Identities = 412/603 (68%), Gaps = 33/603 (5%) Strand=Plus/Plus Query 101516 TTTACATGTTATTTTTCTTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAG 101575 |||| || |||||||| || |||| ||| | ||| | |||| || || || |||||| Sbjct 2824 TTTA-ATTTTATTTTT--TATACAGACATTTTCATGTCAATTTTACCATGGGGATTATAG 2880 Query 101576 TTTTCTAATATAATGTCATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAAT 101635 ||||| | | || || || ||| ||||| || || || ||| || | | | Sbjct 2881 TTTTCAAGGACAAAATCTTCGAATTTGAAGTCGTCTATATTTGTAACTTTACGATTTATC 2940 Query 101636 CTAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTT------TAAGAGCATCA 101689 | | ||| || || |||||||| ||| | | || |||| | || | || Sbjct 2941 TTTAATGTAGGGAATGGTCTAGG--TTCTCTT----TGGATTTGTTGCTTGAGCCCTTCC 2994 Query 101690 ATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGA 101749 | ||| || ||||| | || | ||| || |||||||| ||||| ||||||||| | | | Sbjct 2995 AAGTGGTCAACATACACATGTGTATCGCCCATAGTATGTATAAATTCTCCAGGCTCCAAA 3054 Query 101750 TTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACT 101809 | ||| ||||| |||||||| | ||||||||||| ||| ||||||||||||||||| Sbjct 3055 TCAGTTACATGGGCAATCATTCGAGTTAAAAGAGCATAAGAGGCAATGTTAAATGGCACA 3114 Query 101810 CCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA---TCAC-- 101864 |||| ||||||||| |||||||||||| | | |||||| | ||| || |||| Sbjct 3115 CCTAGTCCCATATCACATGATCTTTGATATAATACACAGGACAACTTAGCAGGCTCACCA 3174 Query 101865 -------------AGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTA 101911 ||||||| ||||||| ||| ||||||||| || || |||| || Sbjct 3175 TTGATAGGTGTAGAGACATAGAATTGACAGAATGAATGACAAGGAGGTAAAGCCATGATA 3234 Query 101912 GGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 ||||| || | | |||||| |||| || | || | | ||| || ||||| | || Sbjct 3235 GGAATATCAGCAGGATTCCAGGCACTCAAAATAATACGGCGATCGGTTGGGTTGTTCTTA 3294 Query 101972 ATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACA 102031 || |||||||| | || | | || ||||| |||| ||| ||||||| | | Sbjct 3295 ATCGTATCAATAACTTGCTGAAGCTGATCAACGCCTTGACCTGTATAATCTGTATCGCAA 3354 Query 102032 CCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCT 102091 || ||||| || ||||| || | ||| ||||| ||||| |||||||| ||||| ||| Sbjct 3355 TCTACATATTTCGCACCGAAGTGACGCCATTGAAAACCATATACAGGTCCGAGATCACCT 3414 Query 102092 TCA 102094 ||| Sbjct 3415 TCA 3417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361238810664314